ViewGene
Locus Name:
GeneID:
Location:

GeneID:491
TrivialName: PA14_22440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22440
PAO1 Ortholog Locus:PA3228
Sequence Length:1833
Protein Length:610
Start: 1954182
Stop: 1952350
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06616.1|AE004745_13 (AE004745) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 609/610 (99%), Positives = 610/610 (100%)
Sequence:
ATGCTTTATCGTCGTTTCGAACGTCTGATCGACCCGTTCCGCAGCGCTTCCGAACGCATGCCGCCCAGCGAA
GTGCTGCGTTTCTATGTCTACTTCCTGCGCCAGGTCTGGCCGGTGTTCCTGGCCCTGCTGGTGGTCGGCCTG
ATCGTCGCGCTGATCGAGGTGGCGCTGTTCAGCTACCTCGGCCGCATCGTCGATCTCGCCCAGAGCACGCCC
AGCGCGGAGTTCTTCCGCGTGCACGCCAACGAACTGATCTGGATGGCGGTGGTGGCGCTGGTCCTGCGCCCG
CTGTTCAACGCCCTGCACGACATGCTGGTGCACCAGAGCATCAACCCGAGCATGACCAACCTGATCCGCTGG
CAGAACCACCGCTACGTGCTCAAGCAGAGCCTCGGCTTCTTCCAGAACGATTTCGCCGGGCGCATCGCCCAG
CGCATCATGCAGACCGGCAACTCGTTGCGCGATTCGGCGGTGCAGGTGGTGGACGCCCTCTGGCACGTGCTG
ATCTATACCGTCAGCGCCCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGATCCCTCTGGTGCTGTGG
GTATTCGCCTACGTCGGCGCCCTCGCCTACTTCGTTCCCCAGGTCAAGCGCCGCTCGGTGGAGGCCTCGGAT
TCGCGCTCGAAGCTGATGGGGCGGATCGTCGACGGCTACACCAACATCACCACGCTGAAGCTGTTCGCCCAC
ACCCGCCAGGAAGAGGACTACGCCCGCGAAGCGATCGGCGACCAGACCCTCAAGTCGCAACGCGCCGGGCGC
GTAGTGACCTCCATGGACGTGACCATCACGGTGATGAACGGCATGCTGATCACCGGCACCACCGGCCTGGCC
CTGTGGCTGTGGAGCCAGGAGCTGATCTCGGTGGGCGCCATCGCCCTGGCCACCGGGCTGGTGATCCGCATC
AACAACATGTCCGGCTGGATCATGTGGGTGGTCGGCGGCATCTTCGAGAACATCGGCCAGGTCCAGGATGGC
ATGCAGACCATCGCCCTGCCGCGCAAGGTGGTCGACCGCGAGGACGCCCAGCCGCTGCGGGTAGAGCGCGGC
GAGGTGGAGTTCGAGCACATCGCCTTCCACTACGGCAAGGGCAGCGGCGTGATCCAGGGTCTCGACCTGAAG
GTCCGGCCCGGCGAGAAGATCGGCCTGGTCGGACCTTCCGGCGCCGGCAAGTCGACCCTGGTCAACCTGCTG
CTGCGCCTGTACGACCTGGAGAGCGGACGCATCCTGGTCGATGGCCAGGACATCGCCGGGGTGACCCAGGAA
AGCCTGCGCGCGCAGATCGGCATGGTCACCCAGGACACCTCGCTGTTGCACCGTTCGATCCGCGACAACCTG
CTCTACGGCCGGCCCGGCGCCAGCGACGCGGAACTCATGGAAGCGGTGCGCAAGGCTCGCGCCGACGAGTTC
ATCCCGCTGCTCAGCGACGCCGAGGGCCGCCGCGGCTTCGACGCCCATGTCGGCGAACGCGGAGTGAAGCTC
TCCGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGGGTGCTGCTCAAGGACGCGCCGATCCTGATCCTCGAC
GAAGCGACCTCGGCGCTGGACTCGGAAGTCGAATCGGCGATCCAGGAAAGCCTGGAGACCCTGATGCAGGGC
AAGACGGTGATCGCCATCGCCCACCGCCTGTCGACCATTGCGCGCATGGACCGCCTGGTGGTGCTGGACAAG
GGCCACATCGCCGAAAGCGGCACGCATGCCGAGTTGCTCGCCCATGGCGGCCTCTATGCGCGCCTCTGGCAA
CACCAGACCGGCGGCTTCGTCGGCGTCGACTGA
Translation:
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTP
SAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQ
RIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASD
SRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGMLITGTTGLA
LWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERG
EVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQE
SLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKL
SGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDK
GHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD*
AnnotationID:500GeneID:491
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:55
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding/permease fusion ABC transporter
Cell Localization:()
Synonyms:bapA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132,COG2274,COG5265
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57547.1| (AE016870) ABC transporter, ATP-binding/permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 610

 Score =  955 bits (2469), Expect = 0.0
 Identities = 474/610 (77%), Positives = 540/610 (88%)

>gb|AAM37642.1| (AE011920) ABC transporter ATP-binding protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 610

 Score =  845 bits (2183), Expect = 0.0
 Identities = 426/609 (69%), Positives = 497/609 (81%)

>dbj|BAB70471.1| (AB073220) ABC-type multidrug efflux pump [Vibrio cholerae non-O1]
          Length = 619

 Score =  648 bits (1672), Expect = 0.0
 Identities = 320/609 (52%), Positives = 442/609 (72%)








 
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, 
ATPase and permease components [Defense mechanisms]
CD-Length = 567 residues,  99.6% aligned
Score =  410 bits (1055), Expect = 2e-115
Identities = 196/582 (33%), Positives = 316/582 (54%), Gaps = 18/582 (3%)

COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an 
N-terminal double-glycine peptidase domain [Defense mechanisms]
CD-Length = 709 residues,  82.5% aligned
Score =  319 bits (818), Expect = 8e-88
Identities = 180/601 (29%), Positives = 298/601 (49%), Gaps = 22/601 (3%)

COG5265, ATM1, ABC-type transport system involved 
in Fe-S cluster assembly, permease and ATPase components 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 497 residues,  95.4% aligned
Score =  277 bits (709), Expect = 3e-75
Identities = 166/491 (33%), Positives = 257/491 (52%), Gaps = 31/491 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:985




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18127




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32313




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:491_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:491
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
856
                           PA3228_tr
                           translation of PA3228
                           610
                           99.83
                           99.99
                           0
                           3067.0
     

     
     
35705
                           gb|AAG06616.1|AE004745_13
                           (AE004745) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
                           610
                           99.83
                           99.99
                           0
                           3067.0
     

     
     
35707
                           gb|AAN70115.1|AE016651_5
                           (AE016791) ABC transporter, ATP-binding protein/permease protein, putative [Pseudomonas putida KT2440]
                           610
                           78.36
                           87.37
                           0
                           2458.0
     

     
     
35706
                           gb|AAO57547.1|
                           (AE016870) ABC transporter, ATP-binding/permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           610
                           77.70
                           88.52
                           0
                           2469.0
     

     
     
35708
                           gb|AAM37642.1|
                           (AE011920) ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           611
                           69.72
                           81.34
                           2
                           2183.0
     

     






      

          
GC ORFID: 43493How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3228Glimmer Score: 

          
Start: 2999749Stop: 3001581

          
Length: 1833


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3228 translation of PA3228Homolog Bit Score 1186.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6054 (ORF: BLASTX 952.0), t_PA3228 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTTATCGTCGTTTCGAACGTCTGATCGACCCGTTCCGCAGCGCTTCCGAACGCATGCCGCCCAGCGAA 
GTGCTGCGTTTCTATGTCTACTTCCTGCGCCAGGTCTGGCCGGTGTTCCTGGCCCTGCTGGTGGTCGGCCTG 
ATCGTCGCGCTGATCGAGGTGGCGCTGTTCAGCTACCTCGGCCGCATCGTCGATCTCGCCCAGAGCACGCCC 
AGCGCGGAGTTCTTCCGCGTGCACGCCAACGAACTGATCTGGATGGCGGTGGTGGCGCTGGTCCTGCGCCCG 
CTGTTCAACGCCCTGCACGACATGCTGGTGCACCAGAGCATCAACCCGAGCATGACCAACCTGATCCGCTGG 
CAGAACCACCGCTACGTGCTCAAGCAGAGCCTCGGCTTCTTCCAGAACGATTTCGCCGGGCGCATCGCCCAG 
CGCATCATGCAGACCGGCAACTCGTTGCGCGATTCGGCGGTGCAGGTGGTGGACGCCCTCTGGCACGTGCTG 
ATCTATACCGTCAGCGCCCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGATCCCTCTGGTGCTGTGG 
GTATTCGCCTACGTCGGCGCCCTCGCCTACTTCGTTCCCCAGGTCAAGCGCCGCTCGGTGGAGGCCTCGGAT 
TCGCGCTCGAAGCTGATGGGGCGGATCGTCGACGGCTACACCAACATCACCACGCTGAAGCTGTTCGCCCAC 
ACCCGCCAGGAAGAGGACTACGCCCGCGAAGCGATCGGCGACCAGACCCTCAAGTCGCAACGCGCCGGGCGC 
GTAGTGACCTCCATGGACGTGACCATCACGGTGATGAACGGCATGCTGATCACCGGCACCACCGGCCTGGCC 
CTGTGGCTGTGGAGCCAGGAGCTGATCTCGGTGGGCGCCATCGCCCTGGCCACCGGGCTGGTGATCCGCATC 
AACAACATGTCCGGCTGGATCATGTGGGTGGTCGGCGGCATCTTCGAGAACATCGGCCAGGTCCAGGATGGC 
ATGCAGACCATCGCCCTGCCGCGCAAGGTGGTCGACCGCGAGGACGCCCAGCCGCTGCGGGTAGAGCGCGGC 
GAGGTGGAGTTCGAGCACATCGCCTTCCACTACGGCAAGGGCAGCGGCGTGATCCAGGGTCTCGACCTGAAG 
GTCCGGCCCGGCGAGAAGATCGGCCTGGTCGGACCTTCCGGCGCCGGCAAGTCGACCCTGGTCAACCTGCTG 
CTGCGCCTGTACGACCTGGAGAGCGGACGCATCCTGGTCGATGGCCAGGACATCGCCGGGGTGACCCAGGAA 
AGCCTGCGCGCGCAGATCGGCATGGTCACCCAGGACACCTCGCTGTTGCACCGTTCGATCCGCGACAACCTG 
CTCTACGGCCGGCCCGGCGCCAGCGACGCGGAACTCATGGAAGCGGTGCGCAAGGCTCGCGCCGACGAGTTC 
ATCCCGCTGCTCAGCGACGCCGAGGGCCGCCGCGGCTTCGACGCCCATGTCGGCGAACGCGGAGTGAAGCTC 
TCCGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGGGTGCTGCTCAAGGACGCGCCGATCCTGATCCTCGAC 
GAAGCGACCTCGGCGCTGGACTCGGAAGTCGAATCGGCGATCCAGGAAAGCCTGGAGACCCTGATGCAGGGC 
AAGACGGTGATCGCCATCGCCCACCGCCTGTCGACCATTGCGCGCATGGACCGCCTGGTGGTGCTGGACAAG 
GGCCACATCGCCGAAAGCGGCACGCATGCCGAGTTGCTCGCCCATGGCGGCCTCTATGCGCGCCTCTGGCAA 
CACCAGACCGGCGGCTTCGTCGGCGTCGACTGA