ViewGene
Locus Name:
GeneID:
Location:

GeneID:4908
TrivialName: PA14_59860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59860
PAO1 Ortholog Locus:
Sequence Length:360
Protein Length:119
Start: 5332241
Stop: 5332600
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84157.1| (AY273869) candidate type III effector Hop protein [Pseudomonas aeruginosa]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
CTGATCTGCACGAGATTCGCCGTGAACACTCCACATCCATCCCTTCGCCGAAGCTGCCTGGCCGTCTTGGCC
TGCAGTGCGCTGGTCGCACAGGGAGCTTTCGCAGCGAGCGCCTCCGAGCAGGCGAACCTGGAGGTGATGATC
CGGCAGCTCAACGCCCTCGAGGACACCGCCCGCCGCAGTGCCCAGGGCGCCGATGAGCCCGGACAGCGCTTC
TACTTCGACTACCCGCGCCTGGCCGCTGACCTGCAGCGCATCCGCCAAGGCCTGCAGGACTACATGACGCCC
AGCCGCGCCCAACCGCGTGACCCTTCCGACTTATCAGGGAATTACACCCTGCGCGGAGGGCCGATGCCATGA
Translation:
MICTRFAVNTPHPSLRRSCLAVLACSALVAQGAFAASASEQANLEVMIRQLNALEDTARRSAQGADEPGQRF
YFDYPRLAADLQRIRQGLQDYMTPSRAQPRDPSDLSGNYTLRGGPMP*
AnnotationID:4913GeneID:4908
AnnotatorUID: diggins
Modification Date/Time: 2006-02-03 21:09:30
Gene Name:
Confidence Code:3
GeneProduct:putative candidate type III effector Hop protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54404.1| (AE016858) candidate type III effector Hop protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 121

 Score =  119 bits (299), Expect = 2e-27
 Identities = 62/115 (53%), Positives = 80/115 (69%), Gaps = 2/115 (1%)







 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15212




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26957




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4908
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
190327
                           gb|AAP84157.1|
                           (AY273869) candidate type III effector Hop protein [Pseudomonas aeruginosa]
                           119
                           99.15
                           99.99
                           0
                           610.0
     

     
     
190328
                           gb|AAO54404.1|
                           (AE016858) candidate type III effector Hop protein [Pseudomonas syringae pv. tomato str. DC3000]
                           128
                           51.56
                           65.62
                           16
                           303.0
     

     






      

          
GC ORFID: 47910How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL030Glimmer Score: 

          
Start: 4595920Stop: 4596279

          
Length: 360


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL030 119 Homolog: ORF118 / Putative transmembrane protein / P. putida / plasmid pWWO (AC86819) translation of RL030Homolog Bit Score 240.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1636 (ORF: BLASTX 115.0), t_RL030 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGATCTGCACGAGATTCGCCGTGAACACTCCACATCCATCCCTTCGCCGAAGCTGCCTGGCCGTCTTGGCC 
TGCAGTGCGCTGGTCGCACAGGGAGCTTTCGCAGCGAGCGCCTCCGAGCAGGCGAACCTGGAGGTGATGATC 
CGGCAGCTCAACGCCCTCGAGGACACCGCCCGCCGCAGTGCCCAGGGCGCCGATGAGCCCGGACAGCGCTTC 
TACTTCGACTACCCGCGCCTGGCCGCTGACCTGCAGCGCATCCGCCAAGGCCTGCAGGACTACATGACGCCC 
AGCCGCGCCCAACCGCGTGACCCTTCCGACTTATCAGGGAATTACACCCTGCGCGGAGGGCCGATGCCATGA