ViewGene
Locus Name:
GeneID:
Location:

GeneID:4907
TrivialName: PA14_46570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46570
PAO1 Ortholog Locus:
Sequence Length:618
Protein Length:205
Start: 4146137
Stop: 4146754
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16995.1| (AL646074) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
Identities = 149/205 (72%), Positives = 171/205 (83%), Gaps = 1/205 (0%)
Sequence:
ATGAACAAGACCCCCTCCCCCAAAGTTGCAGCACGTGGTCCGGTGGATCACGAGGTGCGTGATCAGATCGTG
GCAGCGGCGACCGAGCACTTCCGCCTGTATGGCTACGAGAAGACCACGGTTTCCGACCTGGCCAAGGCCATC
GGTTTTTCCAAGGCCTATATCTACAAGTTCTTCGAGTCCAAGCAGGCCATCGGCGAGATGATCTGCTCGAGC
TGCCTGCAGCAGATACAGACCGAGGTGAATGCTGCCATCCATGAGGTGGACAGCCCGCCGGAGAAGCTGAGG
CGCATGCTCAAGGTGCTGATGGAAGCCTGCCTGCGGCTGTTCTTCCAGGATCGCAAACTCTACGAAATCGCC
GCCTCCGCCGCCTCCGGGCGCTGGCCGGCAACCCTGCTCTACGAAGGCTTCATCGAGCAGACCCTTCGCGAG
ATCCTGCAGCAGGGCCGGCAGAGCGGCGACTTCGAGCGCAAGACGCCTCTGGATGAAACCACCCGCGCGATC
CACCTGATCATGCGCCCCTATTTCAACCCGCTGCTGCTCCAGTACGGGCTCGAAACCACCGATGAAGCGCCG
GCCCTGCTGTCCAGCCTGGTGTTGCGCAGTCTGTCACCCTGA
Translation:
MNKTPSPKVAARGPVDHEVRDQIVAAATEHFRLYGYEKTTVSDLAKAIGFSKAYIYKFFESKQAIGEMICSS
CLQQIQTEVNAAIHEVDSPPEKLRRMLKVLMEACLRLFFQDRKLYEIAASAASGRWPATLLYEGFIEQTLRE
ILQQGRQSGDFERKTPLDETTRAIHLIMRPYFNPLLLQYGLETTDEAPALLSSLVLRSLSP*
AnnotationID:4912GeneID:4907
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 14:02:20
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309, pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Homology with putative transcriptional regulators from 
Pseudomonas syringae pv. phaseolicola 1448A (gi|71735387|ref|YP_273027.1|),
Polaromonas sp. JS666 (gi|67910286|ref|ZP_00508677.1|),
Ralstonia solanacearum (gi|17430232|emb|CAD16995.1|), etc.







 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription].
      CD-Length = 201 residues,  91.5% aligned
      Score = 59.7 bits (142), Expect = 3e-10
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family..
      CD-Length = 47 residues,  91.5% aligned
      Score = 48.0 bits (115), Expect = 9e-07






   
Genomic Context:






   
Comment:


















    ReferenceID:9814




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        8821940,3934044,8626295


MedLine:
        




    
Source:






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:26955




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4907
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
190320
                           emb|CAD16995.1|
                           (AL646074) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           205
                           72.68
                           83.41
                           1
                           765.0
     

     
     
190322
                           gb|AAO54364.1|
                           (AE016858) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           205
                           71.70
                           82.92
                           0
                           757.0
     

     
     
190321
                           gb|AAM39738.1|
                           (AE012139) transcriptional regulator tetR/acrR family [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           207
                           70.53
                           82.60
                           2
                           761.0
     

     
     
190323
                           gb|AAM35328.1|
                           (AE011670) transcriptional regulator tetR/acrR family [Xanthomonas axonopodis pv. citri str. 306]
                           205
                           66.34
                           79.51
                           0
                           707.0
     

     
     
190324
                           gb|AAF84884.1|AE004024_1
                           (AE004024) transcriptional regulator (AcrR family) [Xylella fastidiosa 9a5c]
                           205
                           59.02
                           75.12
                           0
                           613.0
     

     






      

          
GC ORFID: 47909How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold11_revised_gene1942Glimmer Score: 

          
Start: 807772Stop: 807155

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold11_revised_gene1942 related to: gi|15838676|ref|NP_299364.1| (NC_002488) transcriptional regulator (AcrR family) [Xylella fastidiosa 9a5c] pir||B82601 transcription regulator AcrR family XF2085 [imported] - Xylella fastidiosa (strainHomolog Bit Score 240.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1942 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGACCCCCTCCCCCAAAGTTGCAGCACGTGGTCCGGTGGATCACGAGGTGCGTGATCAGATCGTG 
GCAGCGGCGACCGAGCACTTCCGCCTGTATGGCTACGAGAAGACCACGGTTTCCGACCTGGCCAAGGCCATC 
GGTTTTTCCAAGGCCTATATCTACAAGTTCTTCGAGTCCAAGCAGGCCATCGGCGAGATGATCTGCTCGAGC 
TGCCTGCAGCAGATACAGACCGAGGTGAATGCTGCCATCCATGAGGTGGACAGCCCGCCGGAGAAGCTGAGG 
CGCATGCTCAAGGTGCTGATGGAAGCCTGCCTGCGGCTGTTCTTCCAGGATCGCAAACTCTACGAAATCGCC 
GCCTCCGCCGCCTCCGGGCGCTGGCCGGCAACCCTGCTCTACGAAGGCTTCATCGAGCAGACCCTTCGCGAG 
ATCCTGCAGCAGGGCCGGCAGAGCGGCGACTTCGAGCGCAAGACGCCTCTGGATGAAACCACCCGCGCGATC 
CACCTGATCATGCGCCCCTATTTCAACCCGCTGCTGCTCCAGTACGGGCTCGAAACCACCGATGAAGCGCCG 
GCCCTGCTGTCCAGCCTGGTGTTGCGCAGTCTGTCACCCTGA