ViewGene
Locus Name:
GeneID:
Location:

GeneID:4906
TrivialName: PA14_00420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00420
PAO1 Ortholog Locus:PA0033
Sequence Length:366
Protein Length:121
Start: 36291
Stop: 35926
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03423.1|AE004443_1 (AE004443) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/121 (100%), Positives = 121/121 (100%)
Sequence:
ATGCGAACGTTCGACCTGACCGCCGCCCTGGGCGACCGCGCCAACCAACCGGAAATCAGCCGCCTGCTCGTC
GCGCAGCTGATGACCAGCAACAACGAAGACACCCGCAAGCTGCGGCGCGCCCAGGAGCGCGAGCAGACCCAG
GAACTCAACGAGCTGGCGCACCGCCTGGCGGGCATGGCCTCGCTGATCCACGCCCACGCCGTGGAACGCGCC
TGCCACCAACTGGAGATCGCCTGCGGCGAAAGCTCCGTGCGCAAGCTCGCCGATGCCGTCGACGACCTGGTG
ACGGCACTGGGCGAGCTGCAATGCGAACTGCACGACTGGATGACGATGACCGCGCCTCAAGGCACGGCGAAG
TCATAG
Translation:
MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQEREQTQELNELAHRLAGMASLIHAHAVERA
CHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS*
AnnotationID:4911GeneID:4906
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 14:02:52
Gene Name:
Confidence Code:3
GeneProduct:putative histidine phosphotransfer domain
Cell Localization:()
Synonyms:PA0033
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2198
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]
CD-Length = 122 residues,  95.9% aligned
Score = 57.0 bits (137), Expect = 5e-10
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 3/120 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9812




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26953




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33389




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4906_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4906
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7311
                           PA0033_tr
                           translation of PA0033
                           121
                           99.99
                           99.99
                           0
                           612.0
     

     
     
190319
                           gb|AAG03423.1|AE004443_1
                           (AE004443) hypothetical protein PA0033 [Pseudomonas aeruginosa PAO1]
                           121
                           99.99
                           99.99
                           0
                           612.0
     

     






      

          
GC ORFID: 47908How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0033Glimmer Score: 

          
Start: 5837628Stop: 5837263

          
Length: 366


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0033 translation of PA0033Homolog Bit Score 240.0

          
Other Homologs:  t_PA0033 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAACGTTCGACCTGACCGCCGCCCTGGGCGACCGCGCCAACCAACCGGAAATCAGCCGCCTGCTCGTC 
GCGCAGCTGATGACCAGCAACAACGAAGACACCCGCAAGCTGCGGCGCGCCCAGGAGCGCGAGCAGACCCAG 
GAACTCAACGAGCTGGCGCACCGCCTGGCGGGCATGGCCTCGCTGATCCACGCCCACGCCGTGGAACGCGCC 
TGCCACCAACTGGAGATCGCCTGCGGCGAAAGCTCCGTGCGCAAGCTCGCCGATGCCGTCGACGACCTGGTG 
ACGGCACTGGGCGAGCTGCAATGCGAACTGCACGACTGGATGACGATGACCGCGCCTCAAGGCACGGCGAAG 
TCATAG