ViewGene
Locus Name:
GeneID:
Location:

GeneID:4900
TrivialName: PA14_48490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48490
PAO1 Ortholog Locus:
Sequence Length:1041
Protein Length:346
Start: 4310961
Stop: 4309921
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA19975.1| (AL939124) conserved hypothetical protein SC1C2.08 [Streptomyces coelicolor A3(2)]
Identities = 147/341 (43%), Positives = 193/341 (56%), Gaps = 14/341 (4%)
Sequence:
ATGAATACGCTCGACACAGGCTGGCGCATGCCCGCCGAATGGACTCCCCATGCCGCCACCTGGATGGCTTTT
CCGCACAATCGGATGCTCTGGGAGTCCGAATGGGGCGTGAGCCTGGCGGACGTACAACAGGACTTCGCCGCA
GTGGCCAACGCCATCGCGCGTTTCGAACCGGTGAAACTGGTGGTCGACCCCGCCGCGCTGGACAGGGCCGGG
GAGCTGTGCGCGGGCAATGTCGAACTCATCGAGCTGGCCATCGATGACAGTTGGTGCCGCGATTCCGGACCG
AGTTTCGTCTGCCATCCGCAACTCGGGTTGGCCGGTGTCAGCTGGCGTTTCAACGCCTGGGGTGGAAAGTCC
GCCTACGCGCAGGACGCCAGCCTGGCGCGGCGGATTCTCGATGGCCTCGGCCTGGAGTGTTTCGGCGTGCCG
CTGGCCAACGAGGGCGGGGCCATCCACGTGGACGGCGAGGGCACGCTGATCACCACCGAGTCCGTGCTGCTC
AATGCCAATCGCAACCCTGGCCTGAGCAAGGCCGAGATCGAGGCATTGTTCGCCCGCCTGCTCGGCGTGACC
AGGACCATCTGGTTGCCCGGCGATCCCGACCGGGTCACAGGCGACATGACCGATGGCCATGTCGACGGCGTC
TGTGCCTTCGCCCGGCCCGGCGCGTTGTTGCTGGACGCCACCTGCGACACCACCTCCGCCTACGCCGAGGTG
GTGCGGGAGAACCGTCGCGCCCTGGAGCTGGCGCTCGACGCCCGCGGTCGGCGTTTCGAGCTGATCGAACTG
TTCGATGCCGGCGAAGTGGCTCCGGAGGAGGGGGTGTTCTGTGCCTCCTACACCAATTTCTATATCGCCAAT
GGCGCGATCATCATGCCGGCCTACGGTGTCGCCGCCGACGACGCGGCCGCCGCGACCCTGGCCCGGGCCTTC
CCCGCTCGCGAGGTGGTGCCGGTGCGCATCGACCACCTGGCCCACGGCGGCGGCGGCGTGCATTGCATCACC
CAGCAGCAGCCGGCCTGGCCGGCGCGGAGGTGA
Translation:
MNTLDTGWRMPAEWTPHAATWMAFPHNRMLWESEWGVSLADVQQDFAAVANAIARFEPVKLVVDPAALDRAG
ELCAGNVELIELAIDDSWCRDSGPSFVCHPQLGLAGVSWRFNAWGGKSAYAQDASLARRILDGLGLECFGVP
LANEGGAIHVDGEGTLITTESVLLNANRNPGLSKAEIEALFARLLGVTRTIWLPGDPDRVTGDMTDGHVDGV
CAFARPGALLLDATCDTTSAYAEVVRENRRALELALDARGRRFELIELFDAGEVAPEEGVFCASYTNFYIAN
GAIIMPAYGVAADDAAAATLARAFPAREVVPVRIDHLAHGGGGVHCITQQQPAWPARR*
AnnotationID:4905GeneID:4900
AnnotatorUID: danlee
Modification Date/Time: 2005-10-08 16:04:32
Gene Name:
Confidence Code:3
GeneProduct:putative peptidylarginine deiminase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04371, COG2957
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48729336|ref|ZP_00263087.1|  COG2957: Peptidylarginine deiminase and related enzymes [Pseudomonas fluorescens PfO-1]
     Length=350
     Score =  544 bits (1401),  Expect = 2e-153
     Identities = 262/340 (77%), Positives = 294/340 (86%), Gaps = 1/340 (0%)

gi|34104564|gb|AAQ60922.1|  conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
     Length=329
     Score =  280 bits (716),  Expect = 5e-74
     Identities = 158/335 (47%), Positives = 197/335 (58%), Gaps = 9/335 (2%)

gi|46312041|ref|ZP_00212641.1|  COG2957: Peptidylarginine deiminase and related enzymes [Burkholderia cepacia R18194]
     Length=326
     Score =  263 bits (673),  Expect = 5e-69
     Identities = 147/328 (44%), Positives = 195/328 (59%), Gaps = 12/328 (3%)






 
Structural Features:
pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine 
deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal 
arginine residues of various peptides to produce ammonia.
             CD-Length = 329 residues,  99.7% aligned
             Score =  313 bits (803), Expect = 2e-86

COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism].
             CD-Length = 346 residues,  96.5% aligned
             Score =  274 bits (702), Expect = 1e-74






   
Genomic Context:






   
Comment:


















    ReferenceID:9800




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26941




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37566




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4900_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4900
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
189570
                           gb|AAQ60922.1|
                           (AE016921) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           353
                           45.04
                           56.65
                           31
                           727.0
     

     
     
189571
                           emb|CAA19975.1|
                           (AL939124) conserved hypothetical protein SC1C2.08 [Streptomyces coelicolor A3(2)]
                           361
                           40.99
                           54.29
                           37
                           664.0
     

     
     
7281
                           PA0292_tr
                           translation of PA0292
                           385
                           40.77
                           50.64
                           56
                           637.0
     

     
     
189573
                           gb|AAG03681.1|AE004467_3
                           (AE004467) agmatine deiminase [Pseudomonas aeruginosa PAO1]
                           385
                           40.77
                           50.64
                           56
                           637.0
     

     
     
189572
                           dbj|BAC70425.1|
                           (AP005032) putative agmatine deiminase [Streptomyces avermitilis MA-4680]
                           356
                           40.73
                           55.05
                           20
                           634.0
     

     






      

          
GC ORFID: 47902How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0292Glimmer Score: 

          
Start: 642947Stop: 643987

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0292 translation of PA0292Homolog Bit Score 241.0

          
Other Homologs:  t_PA0292 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACGCTCGACACAGGCTGGCGCATGCCCGCCGAATGGACTCCCCATGCCGCCACCTGGATGGCTTTT 
CCGCACAATCGGATGCTCTGGGAGTCCGAATGGGGCGTGAGCCTGGCGGACGTACAACAGGACTTCGCCGCA 
GTGGCCAACGCCATCGCGCGTTTCGAACCGGTGAAACTGGTGGTCGACCCCGCCGCGCTGGACAGGGCCGGG 
GAGCTGTGCGCGGGCAATGTCGAACTCATCGAGCTGGCCATCGATGACAGTTGGTGCCGCGATTCCGGACCG 
AGTTTCGTCTGCCATCCGCAACTCGGGTTGGCCGGTGTCAGCTGGCGTTTCAACGCCTGGGGTGGAAAGTCC 
GCCTACGCGCAGGACGCCAGCCTGGCGCGGCGGATTCTCGATGGCCTCGGCCTGGAGTGTTTCGGCGTGCCG 
CTGGCCAACGAGGGCGGGGCCATCCACGTGGACGGCGAGGGCACGCTGATCACCACCGAGTCCGTGCTGCTC 
AATGCCAATCGCAACCCTGGCCTGAGCAAGGCCGAGATCGAGGCATTGTTCGCCCGCCTGCTCGGCGTGACC 
AGGACCATCTGGTTGCCCGGCGATCCCGACCGGGTCACAGGCGACATGACCGATGGCCATGTCGACGGCGTC 
TGTGCCTTCGCCCGGCCCGGCGCGTTGTTGCTGGACGCCACCTGCGACACCACCTCCGCCTACGCCGAGGTG 
GTGCGGGAGAACCGTCGCGCCCTGGAGCTGGCGCTCGACGCCCGCGGTCGGCGTTTCGAGCTGATCGAACTG 
TTCGATGCCGGCGAAGTGGCTCCGGAGGAGGGGGTGTTCTGTGCCTCCTACACCAATTTCTATATCGCCAAT 
GGCGCGATCATCATGCCGGCCTACGGTGTCGCCGCCGACGACGCGGCCGCCGCGACCCTGGCCCGGGCCTTC 
CCCGCTCGCGAGGTGGTGCCGGTGCGCATCGACCACCTGGCCCACGGCGGCGGCGGCGTGCATTGCATCACC 
CAGCAGCAGCCGGCCTGGCCGGCGCGGAGGTGA