ViewGene

Locus Name:
GeneID:
Location:

GeneID:490
TrivialName: PA14_44030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44030
PAO1 Ortholog Locus:PA1583
Sequence Length:1773
Protein Length:590
Start: 3922013
Stop: 3920241
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04972.1|AE004586_10 (AE004586) succinate dehydrogenase (A subunit) [Pseudomonas aeruginosa PAO1]
Identities = 590/590 (100%), Positives = 590/590 (100%)
Sequence:
ATGGCTAGCATTCGTACACTTTCCTTTGACGCCATCATCGTCGGTGGCGGTGGCGCCGGCATGCGTGCCGCG
CTGCAACTGGCCCAGGGCGGCCACAAGACCGCCGTGGTGACCAAGGTCTTCCCGACCCGTTCCCACACCGTA
TCCGCACAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGATTGGCGTTGGCACATGTAC
GACACCGTCAAGGGCTCCGACTACATCGGTGACCAGGACGCGATCGAATACATGTGTTCCGTCGGTCCCGAG
GCCGTGTTCGAGCTCGAGCACATGGGCCTGCCGTTCTCCCGTACCGAAACCGGCCGCATCTACCAGCGTCCG
TTCGGCGGCCAGTCCAAGGACTTCGGCAAGGGTGGCCAGGCCGCCCGTACCTGCGCCGCCGCCGACCGTACC
GGCCACGCGCTGCTGCACACCCTGTACCAGGCCAACCTGAAGAATGGCACCTCGTTCCTCAACGAGTGGTAC
GCGGTCGACCTGGTGAAGAACCAGGACGGCGCGGTGGTCGGCATCATCGCCATCTGCATCGAGACCGGCGAG
ACCGTCTATATCCGTTCCAAGGCCGTGGTCCTGGCCACTGGCGGTGCCGGCCGTATCTACGCCTCCACCACC
AACGCGCTGATCAACACCGGTGACGGCGTGGGCATGGCCCTGCGTGCCGGCGTGCCGGTGCAGGACATCGAG
ATGTGGCAGTTCCACCCGACCGGCATCGCCGGCGCCGGTGTACTGGTCACCGAAGGTTGCCGCGGCGAAGGC
GGCTACCTGATCAACGCCCACGGCGAGCGCTTCATGGAGCGTTATGCGCCGAACGCGAAGGACCTGGCCGGT
CGCGACGTGGTCGCTCGTTCCATGGTCAAGGAAGTCCTGGCCGGCAACGGCGTGGGCCCGAACAAGGACCAC
GTGCTGCTGAAACTCGACCACCTCGGCGAGGAAGTCCTGCACAGCCGCCTGCCCGGCATCTGCGAACTGTCC
AAGACCTTCGCCCACGTCGACCCGGTCGTCGCGCCGATCCCGGTGATCCCGACCTGCCACTACATGATGGGT
GGCGTTGCCACCAACATCCATGGCCAGGCCATCACCCAGGATGCCAATGGCAACGACCAGATCGTCGAAGGC
CTGTTCGCCGTAGGCGAAGTGGCCTGCGTATCGGTACACGGCGCCAACCGCCTGGGCGGCAACTCGCTGCTC
GACCTGGTGGTATTCGGCCGTGCCGCCGGTCTGCACCTGGAAAAAGCGCTGAAAGAAGGCATCGACGCCCGC
GGCGCTTCCGAGAGCGACCTGGAAGCCTCCTTCAAGCGCCTGAACGGCGTGAACGAGCGCACCAGCGGCGAA
GAAGTCGCTCCGCTCAAGCGCGAGCTGCAAAGCTGCATGCAGAACTACTTCGGTGTATTCCGCACCGGCGAG
TACATGCAGAAGGGCATCGCCCAGCTGGCCGACCTGCGCGAGCGTATCGCCAACGTCAAGATCAACGACAAG
AGCCAGGCATTCAACACCGCGCGCATCGAAGCGCTGGAACTGCAAAACCTCCTCGAGGTGGCCGAGGCCACC
GCGATCGCGGCCGAGCACCGCAAGGAGTCCCGTGGCGCCCACGCCCGTGAAGACTTCGAGGAGCGCGACGAC
GAGAACTGGCTGTGCCACACCCTGTACTTCCCGGGTGAGAAGCGCGTATCCAAGCGTTCCGTCAACTTCGCG
CCGAAGACCGTTCCGGCATTCGAACCCAAGGTTCGGACTTACTAA
Translation:
MASIRTLSFDAIIVGGGGAGMRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMY
DTVKGSDYIGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRT
GHALLHTLYQANLKNGTSFLNEWYAVDLVKNQDGAVVGIIAICIETGETVYIRSKAVVLATGGAGRIYASTT
NALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGCRGEGGYLINAHGERFMERYAPNAKDLAG
RDVVARSMVKEVLAGNGVGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVIPTCHYMMG
GVATNIHGQAITQDANGNDQIVEGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIDAR
GASESDLEASFKRLNGVNERTSGEEVAPLKRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVKINDK
SQAFNTARIEALELQNLLEVAEATAIAAEHRKESRGAHAREDFEERDDENWLCHTLYFPGEKRVSKRSVNFA
PKTVPAFEPKVRTY*
AnnotationID:499GeneID:490
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 06:06:57
Gene Name:sdhA
Confidence Code:2
GeneProduct:succinate dehydrogenase (A subunit)
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:succinate dehydrogenase, flavoprotein subunit
Functional Category Confidence Code:5
COGs:COG1053
Secondary Functional Category(ies):
EC Number:1.3.99.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69772.1|AE016613_7 (AE016789) succinate dehydrogenase, flavoprotein subunit
           [Pseudomonas putida KT2440]
          Length = 590

 Score = 1101 bits (2848), Expect = 0.0
 Identities = 537/590 (91%), Positives = 566/590 (95%)

>gb|AAO55713.1| (AE016863) succinate dehydrogenase, flavoprotein subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 590

 Score = 1089 bits (2817), Expect = 0.0
 Identities = 533/590 (90%), Positives = 562/590 (95%)

>gb|AAN79274.1|AE016757_178 (AE016757) Succinate dehydrogenase flavoprotein subunit
           [Escherichia coli CFT073]
          Length = 592

 Score =  842 bits (2176), Expect = 0.0
 Identities = 412/583 (70%), Positives = 477/583 (81%), Gaps = 3/583 (0%)

Structural Features:
COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
[Energy production and conversion]
CD-Length = 562 residues,  99.6% aligned
Score =  624 bits (1611), Expect = 7e-180
Identities = 300/579 (51%), Positives = 381/579 (65%), Gaps = 26/579 (4%)
Genomic Context:
Comment:
ReferenceID:983
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18125
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36506
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:490_cdd.html
URL:
ReferenceID:36572
Author/Investigator(s): Wood D, Darlison MG, Wilde RJ, Guest JR.
Title: Nucleotide sequence encoding the flavoprotein and hydrophobic subunits of the succinate dehydrogenase of Escherichia coli.
PubMed: 6383359
MedLine:
Source:
Biochem J. 1984 Sep 1;222(2):519-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6383359
ReferenceID:36574
Author/Investigator(s): Phillips MK, Hederstedt L, Hasnain S, Rutberg L, Guest JR.
Title: Nucleotide sequence encoding the flavoprotein and iron-sulfur protein subunits of the Bacillus subtilis PY79 succinate dehydrogenase complex.
PubMed: 3027051
MedLine:
Source:
J Bacteriol. 1987 Feb;169(2):864-73.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3027051
Homologs By Global Alignment
Gene ID:490

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
855 PA1583_tr translation of PA1583 590 99.99 99.99 0 3067.0
35592 gb|AAG04972.1|AE004586_10 (AE004586) succinate dehydrogenase (A subunit) [Pseudomonas aeruginosa PAO1] 590 99.99 99.99 0 3067.0
35593 gb|AAN69772.1|AE016613_7 (AE016789) succinate dehydrogenase, flavoprotein subunit [Pseudomonas putida KT2440] 590 91.01 95.93 0 2848.0
35594 gb|AAO55713.1| (AE016863) succinate dehydrogenase, flavoprotein subunit [Pseudomonas syringae pv. tomato str. DC3000] 590 90.33 95.25 0 2817.0
35599 gb|AAL19678.1| (AE008730) succinate dehydrogenase, flavoprotein subunit [Salmonella typhimurium LT2] 591 69.71 80.71 4 2174.0
GC ORFID: 43492How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1583Glimmer Score:
Start: 1031896Stop: 1033668
Length: 1773
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1583 translation of PA1583Homolog Bit Score 1186.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene992 (ORF: BLASTX 1086.0), t_PA1583 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTAGCATTCGTACACTTTCCTTTGACGCCATCATCGTCGGTGGCGGTGGCGCCGGCATGCGTGCCGCG
CTGCAACTGGCCCAGGGCGGCCACAAGACCGCCGTGGTGACCAAGGTCTTCCCGACCCGTTCCCACACCGTA
TCCGCACAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGATTGGCGTTGGCACATGTAC
GACACCGTCAAGGGCTCCGACTACATCGGTGACCAGGACGCGATCGAATACATGTGTTCCGTCGGTCCCGAG
GCCGTGTTCGAGCTCGAGCACATGGGCCTGCCGTTCTCCCGTACCGAAACCGGCCGCATCTACCAGCGTCCG
TTCGGCGGCCAGTCCAAGGACTTCGGCAAGGGTGGCCAGGCCGCCCGTACCTGCGCCGCCGCCGACCGTACC
GGCCACGCGCTGCTGCACACCCTGTACCAGGCCAACCTGAAGAATGGCACCTCGTTCCTCAACGAGTGGTAC
GCGGTCGACCTGGTGAAGAACCAGGACGGCGCGGTGGTCGGCATCATCGCCATCTGCATCGAGACCGGCGAG
ACCGTCTATATCCGTTCCAAGGCCGTGGTCCTGGCCACTGGCGGTGCCGGCCGTATCTACGCCTCCACCACC
AACGCGCTGATCAACACCGGTGACGGCGTGGGCATGGCCCTGCGTGCCGGCGTGCCGGTGCAGGACATCGAG
ATGTGGCAGTTCCACCCGACCGGCATCGCCGGCGCCGGTGTACTGGTCACCGAAGGTTGCCGCGGCGAAGGC
GGCTACCTGATCAACGCCCACGGCGAGCGCTTCATGGAGCGTTATGCGCCGAACGCGAAGGACCTGGCCGGT
CGCGACGTGGTCGCTCGTTCCATGGTCAAGGAAGTCCTGGCCGGCAACGGCGTGGGCCCGAACAAGGACCAC
GTGCTGCTGAAACTCGACCACCTCGGCGAGGAAGTCCTGCACAGCCGCCTGCCCGGCATCTGCGAACTGTCC
AAGACCTTCGCCCACGTCGACCCGGTCGTCGCGCCGATCCCGGTGATCCCGACCTGCCACTACATGATGGGT
GGCGTTGCCACCAACATCCATGGCCAGGCCATCACCCAGGATGCCAATGGCAACGACCAGATCGTCGAAGGC
CTGTTCGCCGTAGGCGAAGTGGCCTGCGTATCGGTACACGGCGCCAACCGCCTGGGCGGCAACTCGCTGCTC
GACCTGGTGGTATTCGGCCGTGCCGCCGGTCTGCACCTGGAAAAAGCGCTGAAAGAAGGCATCGACGCCCGC
GGCGCTTCCGAGAGCGACCTGGAAGCCTCCTTCAAGCGCCTGAACGGCGTGAACGAGCGCACCAGCGGCGAA
GAAGTCGCTCCGCTCAAGCGCGAGCTGCAAAGCTGCATGCAGAACTACTTCGGTGTATTCCGCACCGGCGAG
TACATGCAGAAGGGCATCGCCCAGCTGGCCGACCTGCGCGAGCGTATCGCCAACGTCAAGATCAACGACAAG
AGCCAGGCATTCAACACCGCGCGCATCGAAGCGCTGGAACTGCAAAACCTCCTCGAGGTGGCCGAGGCCACC
GCGATCGCGGCCGAGCACCGCAAGGAGTCCCGTGGCGCCCACGCCCGTGAAGACTTCGAGGAGCGCGACGAC
GAGAACTGGCTGTGCCACACCCTGTACTTCCCGGGTGAGAAGCGCGTATCCAAGCGTTCCGTCAACTTCGCG
CCGAAGACCGTTCCGGCATTCGAACCCAAGGTTCGGACTTACTAA