ViewGene
Locus Name:
GeneID:
Location:

GeneID:4898
TrivialName: PA14_07980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07980
PAO1 Ortholog Locus:PA0613
Sequence Length:360
Protein Length:119
Start: 687357
Stop: 687716
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA83135.1| (AB030826) hypothetical protein [Pseudomonas aeruginosa]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
GTGATCAAAGCCATCGATGAAATGCTCAAGCTCTGGGCCGAGGAAATGCACGCGCCAGGCAGCAACGGAGGC
GGCTACGCCGGCGGCAACCTGATCGCCATGCTGATCGCCAGCAAGGGCGAGGTGGTCCGCGGCCACCGTGGC
AGCCGGGTGATCCTCGACCGTGTGGCGGAGGTCGATCGCCTGGTAAATCGCCTACCCGAGGAACTGAAGAAC
GTGGTGGTGGAGCACTATCTCAATCGCGACAGCTTCCCCGAGCAGAAGTACCGCCACTGCGGTTGCAGCCGC
AACACCTTCTATCTGCGCCTGCATGTGGCGCACCAGGGTATCCAGGACGGCCTGCTGCGGCGGGTGGCCTGA
Translation:
MIKAIDEMLKLWAEEMHAPGSNGGGYAGGNLIAMLIASKGEVVRGHRGSRVILDRVAEVDRLVNRLPEELKN
VVVEHYLNRDSFPEQKYRHCGCSRNTFYLRLHVAHQGIQDGLLRRVA*
AnnotationID:4903GeneID:4898
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0613
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15206




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26937




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4898
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7280
                           PA0613_tr
                           translation of PA0613
                           119
                           99.15
                           99.15
                           0
                           615.0
     

     
     
189564
                           dbj|BAA83135.1|
                           (AB030826) hypothetical protein [Pseudomonas aeruginosa]
                           119
                           99.15
                           99.99
                           0
                           618.0
     

     
     
189565
                           gb|AAG04002.1|AE004497_9
                           (AE004497) hypothetical protein PA0613 [Pseudomonas aeruginosa PAO1]
                           119
                           98.31
                           99.15
                           0
                           612.0
     

     
     
189566
                           dbj|BAA83149.1|
                           (AB030825) hypothetical protein [Pseudomonas aeruginosa]
                           119
                           98.31
                           99.15
                           0
                           612.0
     

     
     
189567
                           gb|AAO56895.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           120
                           58.33
                           71.66
                           2
                           338.0
     

     






      

          
GC ORFID: 47900How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0613Glimmer Score: 

          
Start: 6488700Stop: 6489059

          
Length: 360


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0613 translation of PA0613Homolog Bit Score 241.0

          
Other Homologs:  t_PA0613 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCAAAGCCATCGATGAAATGCTCAAGCTCTGGGCCGAGGAAATGCACGCGCCAGGCAGCAACGGAGGC 
GGCTACGCCGGCGGCAACCTGATCGCCATGCTGATCGCCAGCAAGGGCGAGGTGGTCCGCGGCCACCGTGGC 
AGCCGGGTGATCCTCGACCGTGTGGCGGAGGTCGATCGCCTGGTAAATCGCCTACCCGAGGAACTGAAGAAC 
GTGGTGGTGGAGCACTATCTCAATCGCGACAGCTTCCCCGAGCAGAAGTACCGCCACTGCGGTTGCAGCCGC 
AACACCTTCTATCTGCGCCTGCATGTGGCGCACCAGGGTATCCAGGACGGCCTGCTGCGGCGGGTGGCCTGA