ViewGene
Locus Name:
GeneID:
Location:

GeneID:4897
TrivialName: PA14_04530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04530
PAO1 Ortholog Locus:PA0346
Sequence Length:363
Protein Length:120
Start: 403507
Stop: 403869
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03735.1|AE004472_7 (AE004472) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 118/120 (98%), Positives = 119/120 (99%)
Sequence:
ATGAAGGTAGTACGCCGATACCCCCTGGCGCTGTTGCTGGGGATGGCGGGCGCGCTGGCCGACGAGTTGCCC
GATGGCTCCTTGCTGCAACGCTATGGCGTGCAGGCCGACCAGTTGCCGACCCTGGCGGCGGATCCGCCGTCG
CGCAAGGAGGAGAAGGAAACGCCGTCGCGCTTCCGGGTGGAGCCGGAGCAGCCCTTGGTGACCTTTGGCGTC
AAGGACCACAAGGGCGTGGAACCCACCGGCAACCTGTCGATCGACGCCATGCACGAGCGCGATCGGCGGATC
TGCCGGAACATCAGGCGGCAGGCGCTGGAGAAGGGCAAGGCACAGCCCTTCGACGGCTACATCGAGTGTCCA
TGA
Translation:
MKVVRRYPLALLLGMAGALADELPDGSLLQRYGVQADQLPTLAADPPSRKEEKETPSRFRVEPEQPLVTFGV
KDHKGVEPTGNLSIDAMHERDRRICRNIRRQALEKGKAQPFDGYIECP*
AnnotationID:4902GeneID:4897
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0346
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9794




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26935




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4897
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7279
                           PA0346_tr
                           translation of PA0346
                           120
                           98.33
                           99.16
                           0
                           616.0
     

     
     
189563
                           gb|AAG03735.1|AE004472_7
                           (AE004472) hypothetical protein PA0346 [Pseudomonas aeruginosa PAO1]
                           120
                           98.33
                           99.16
                           0
                           616.0
     

     






      

          
GC ORFID: 47899How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0346Glimmer Score: 

          
Start: 6204849Stop: 6205211

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0346 translation of PA0346Homolog Bit Score 241.0

          
Other Homologs:  t_PA0346 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGTAGTACGCCGATACCCCCTGGCGCTGTTGCTGGGGATGGCGGGCGCGCTGGCCGACGAGTTGCCC 
GATGGCTCCTTGCTGCAACGCTATGGCGTGCAGGCCGACCAGTTGCCGACCCTGGCGGCGGATCCGCCGTCG 
CGCAAGGAGGAGAAGGAAACGCCGTCGCGCTTCCGGGTGGAGCCGGAGCAGCCCTTGGTGACCTTTGGCGTC 
AAGGACCACAAGGGCGTGGAACCCACCGGCAACCTGTCGATCGACGCCATGCACGAGCGCGATCGGCGGATC 
TGCCGGAACATCAGGCGGCAGGCGCTGGAGAAGGGCAAGGCACAGCCCTTCGACGGCTACATCGAGTGTCCA 
TGA