ViewGene
Locus Name:
GeneID:
Location:

GeneID:4896
TrivialName: PA14_71080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71080
PAO1 Ortholog Locus:PA5381
Sequence Length:378
Protein Length:125
Start: 6333118
Stop: 6332741
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08766.1|AE004950_9 (AE004950) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/125 (99%), Positives = 124/125 (99%)
Sequence:
GTGGCGGTGTCGCTGACGGTCGAATTAGCCGAAAACGACCTGCCCATGTCCAGGCGGGACAGCCCCCTTGCC
GGGAGCGACGTGGGCTCAGCAGAATCGATGGCAATCCCCATCGAAGGAGCTGCCGCGATGATGCACGCCGAT
CTGATCGACCAGGACGATTTCCGCGAACGCCTGCAGGCGCTGGGCTTCAGCGTGCCGCCGGACTCGACTCCG
GAGCAGGCCTGCGAATACGCCGTGCGTGGCCTCAGCCCGGAGCGCGCCCAGGCGCTGCGGCGGCTGGTGGAG
GACATGCTCGGCGGGCACGCCACGCTGCTGCCGGCGGTGCGCGAGGCGATTTCCCGGCAACTGCTGCCGGCG
CTGGTGCCGCGGGGCTGA
Translation:
MAVSLTVELAENDLPMSRRDSPLAGSDVGSAESMAIPIEGAAAMMHADLIDQDDFRERLQALGFSVPPDSTP
EQACEYAVRGLSPERAQALRRLVEDMLGGHATLLPAVREAISRQLLPALVPRG*
AnnotationID:4901GeneID:4896
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15204




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26933




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4896
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7278
                           PA5381_tr
                           translation of PA5381
                           125
                           99.20
                           99.20
                           0
                           615.0
     

     
     
189560
                           gb|AAG08766.1|AE004950_9
                           (AE004950) hypothetical protein PA5381 [Pseudomonas aeruginosa PAO1]
                           125
                           98.40
                           99.20
                           0
                           612.0
     

     
     
189561
                           gb|AAO53947.1|
                           (AE016857) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           131
                           41.22
                           48.85
                           49
                           251.0
     

     
     
189562
                           gb|AAN65930.1|AE016221_2
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           154
                           38.31
                           51.29
                           31
                           250.0
     

     






      

          
GC ORFID: 47898How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5381Glimmer Score: 

          
Start: 5596807Stop: 5596430

          
Length: 378


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5381 translation of PA5381Homolog Bit Score 241.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8151 (ORF: BLASTX 102.0)

          
GC ORF Sequence

           
GTGGCGGTGTCGCTGACGGTCGAATTAGCCGAAAACGACCTGCCCATGTCCAGGCGGGACAGCCCCCTTGCC 
GGGAGCGACGTGGGCTCAGCAGAATCGATGGCAATCCCCATCGAAGGAGCTGCCGCGATGATGCACGCCGAT 
CTGATCGACCAGGACGATTTCCGCGAACGCCTGCAGGCGCTGGGCTTCAGCGTGCCGCCGGACTCGACTCCG 
GAGCAGGCCTGCGAATACGCCGTGCGTGGCCTCAGCCCGGAGCGCGCCCAGGCGCTGCGGCGGCTGGTGGAG 
GACATGCTCGGCGGGCACGCCACGCTGCTGCCGGCGGTGCGCGAGGCGATTTCCCGGCAACTGCTGCCGGCG 
CTGGTGCCGCGGGGCTGA