ViewGene
Locus Name:
GeneID:
Location:

GeneID:4895
TrivialName: PA14_58210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58210
PAO1 Ortholog Locus:PA4485
Sequence Length:378
Protein Length:125
Start: 5180631
Stop: 5181008
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07873.1|AE004862_7 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/125 (98%), Positives = 123/125 (98%)
Sequence:
ATGCCCAACCCATCCGCCGCCGCGCGCCTCGCCCTCGCCGTCCTGCCCCTGTTCCTCGCCGGCTGCTCCAGC
CTCGCCGGCAGCGGTTCCGCGGATACCGGCGAAGCCTCCTACTATGGCAGCCGCCACGCAGGCCTGCGTACT
GCCAGCGGCGAGCGCTACAACCCCAACGCAATGACCGCTGCCCACCGCACGTTGCCGTTCGGTACCCGCGTG
CGGGTAACCAACCTCGACAACCGCCGCAGCGTGGTGGTGCGGATCAACGATCGCGGGCCGTTCCGCCGCGGG
CGGATCATCGATGTATCGCGCAAGGCCGCCGAAGGCCTGGGTATGATCCGCAGCGGCGTGGCGCCGGTTCGG
ATAGAGTCGCTGGATTGA
Translation:
MPNPSAAARLALAVLPLFLAGCSSLAGSGSADTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGTRV
RVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESLD*
AnnotationID:4900GeneID:4895
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 14:02:28
Gene Name:
Confidence Code:3
GeneProduct:putative rplA family protein
Cell Localization:()
Synonyms:PA4485
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03330
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57925.1| (AE016872) rplA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 122

 Score =  149 bits (375), Expect = 4e-36
 Identities = 76/118 (64%), Positives = 97/118 (82%), Gaps = 3/118 (2%)


>gb|AAN66554.1|AE016284_2 (AE016777) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 124

 Score =  145 bits (366), Expect = 4e-35
 Identities = 74/109 (67%), Positives = 88/109 (80%), Gaps = 2/109 (1%)






 
Structural Features:
COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]

pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel.
CD-Length = 96 residues, 100.0% aligned
Score =  138 bits (350), Expect = 3e-34
Identities = 65/96 (67%), Positives = 79/96 (82%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9790




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26931




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31528




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4895_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4895
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7276
                           PA4485_tr
                           translation of PA4485
                           125
                           98.40
                           98.40
                           0
                           617.0
     

     
     
189528
                           gb|AAG07873.1|AE004862_7
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           125
                           98.40
                           98.40
                           0
                           617.0
     

     
     
189529
                           gb|AAO57925.1|
                           (AE016872) rplA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           128
                           60.15
                           75.00
                           9
                           376.0
     

     
     
189530
                           gb|AAN66554.1|AE016284_2
                           (AE016777) lipoprotein, putative [Pseudomonas putida KT2440]
                           130
                           59.23
                           71.53
                           11
                           368.0
     

     
     
189538
                           dbj|BAB51182.1|
                           (AP003004) rare lipoprotein A [Mesorhizobium loti]
                           129
                           48.83
                           66.66
                           11
                           281.0
     

     






      

          
GC ORFID: 47897How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4485Glimmer Score: 

          
Start: 4444310Stop: 4444687

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4485 translation of PA4485Homolog Bit Score 242.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5566 (ORF: BLASTX 151.0), t_PA4485 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACCCATCCGCCGCCGCGCGCCTCGCCCTCGCCGTCCTGCCCCTGTTCCTCGCCGGCTGCTCCAGC 
CTCGCCGGCAGCGGTTCCGCGGATACCGGCGAAGCCTCCTACTATGGCAGCCGCCACGCAGGCCTGCGTACT 
GCCAGCGGCGAGCGCTACAACCCCAACGCAATGACCGCTGCCCACCGCACGTTGCCGTTCGGTACCCGCGTG 
CGGGTAACCAACCTCGACAACCGCCGCAGCGTGGTGGTGCGGATCAACGATCGCGGGCCGTTCCGCCGCGGG 
CGGATCATCGATGTATCGCGCAAGGCCGCCGAAGGCCTGGGTATGATCCGCAGCGGCGTGGCGCCGGTTCGG 
ATAGAGTCGCTGGATTGA