ViewGene
Locus Name:
GeneID:
Location:

GeneID:4894
TrivialName: PA14_25770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25770
PAO1 Ortholog Locus:PA2960
Sequence Length:357
Protein Length:118
Start: 2249314
Stop: 2249670
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06348.1|AE004722_4 (AE004722) type 4 fimbrial biogenesis protein PilZ [Pseudomonas aeruginosa PAO1]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTT
TACGCCGCCTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGC
GACGAGGTCTTCATGCTGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGG
ATCACCCCGAAGGGCGCTCAGGGCAACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACC
GCCCGCAACAAGATCGAAACCTACCTGGCCGGGGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA
Translation:
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVW
ITPKGAQGNRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM*
AnnotationID:4899GeneID:4894
AnnotatorUID: diggins
Modification Date/Time: 2005-04-10 15:03:39
Gene Name:pilZ
Confidence Code:1
GeneProduct:type 4 fimbrial biogenesis protein PilZ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07238
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57293.1| (AE016869) type IV pilus biogenesis protein PilZ [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 118

 Score =  218 bits (555), Expect = 5e-57
 Identities = 104/118 (88%), Positives = 112/118 (94%)

>gb|AAM40324.1| (AE012198) type IV fimbriae assembly protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 117

 Score =  156 bits (395), Expect = 2e-38
 Identities = 75/114 (65%), Positives = 89/114 (78%), Gaps = 2/114 (1%)

>gb|AAM36006.1| (AE011741) type IV fimbriae assembly protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 117

 Score =  155 bits (391), Expect = 5e-38
 Identities = 74/114 (64%), Positives = 87/114 (76%), Gaps = 2/114 (1%)








 
Structural Features:
pfam07238, PilZ, Type IV pilus assembly protein PilZ.
CD-Length = 115 residues, 100.0% aligned
Score =  182 bits (464), Expect = 7e-48
Identities = 80/115 (69%), Positives = 94/115 (81%), Gaps = 2/115 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9788




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26929




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36092




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4894_cdd.html


    		




 
URL:

















    ReferenceID:36430




  
Author/Investigator(s):
        Alm RA, Bodero AJ, Free PD, Mattick JS.





  
Title:
        Identification of a novel gene, pilZ, essential for type 4 fimbrial biogenesis in Pseudomonas aeruginosa.




  
PubMed:
        8550441


MedLine:
        




    
Source:
J Bacteriol. 1996 Jan;178(1):46-53.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550441









           
Homologs By Global Alignment 

           

       



     
Gene ID:4894
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7275
                           PA2960_tr
                           translation of PA2960
                           118
                           99.99
                           99.99
                           0
                           617.0
     

     
     
189519
                           gb|AAG06348.1|AE004722_4
                           (AE004722) type 4 fimbrial biogenesis protein PilZ [Pseudomonas aeruginosa PAO1]
                           118
                           99.99
                           99.99
                           0
                           617.0
     

     
     
189520
                           gb|AAA93519.1|
                           (L42622) involved in biogenesis of type 4 fimbriae [Pseudomonas aeruginosa]
                           118
                           99.99
                           99.99
                           0
                           617.0
     

     
     
189521
                           gb|AAO57293.1|
                           (AE016869) type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. tomato str. DC3000]
                           118
                           88.13
                           94.91
                           0
                           555.0
     

     
     
189522
                           gb|AAM40324.1|
                           (AE012198) type IV fimbriae assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           120
                           64.16
                           75.83
                           5
                           394.0
     

     






      

          
GC ORFID: 47896How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2960Glimmer Score: 

          
Start: 2704611Stop: 2704255

          
Length: 357


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2960 translation of PA2960Homolog Bit Score 242.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2615 (ORF: BLASTX 222.0), t_PA2960 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTT 
TACGCCGCCTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGC 
GACGAGGTCTTCATGCTGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGG 
ATCACCCCGAAGGGCGCTCAGGGCAACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACC 
GCCCGCAACAAGATCGAAACCTACCTGGCCGGGGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA