ViewGene
Locus Name:
GeneID:
Location:

GeneID:4893
TrivialName: PA14_08420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08420
PAO1 Ortholog Locus:PA0656
Sequence Length:339
Protein Length:112
Start: 720604
Stop: 720266
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04045.1|AE004500_11 (AE004500) probable HIT family protein [Pseudomonas aeruginosa PAO1]
Identities = 112/112 (100%), Positives = 112/112 (100%)
Sequence:
ATGGACTGTCTGTTCTGCAAGATCGTGGCGGGGGAAGTTCCCGCGCGCAAGTTCTACGAAGACGAGGAAGTT
GTCGCGTTTCACGATATCGGCCCGCAGGCGCCGGTGCACTTCCTGGTCATCCCGAAAAGGCACATTCCCACC
CTCGAGCACCTGACCGAGGCAGACCGGCCGCTGGCAGGCCATATCCTCTTCACCGCCCAGCGCCTGGCCCGG
GAGCAGGGCTGCGAGGAAGGCTTCCGTGTGGTGATGAACTGCAACGACCTTGGCGGGCAGACCGTGCACCAC
ATCCACATGCACGTGCTGGGTCAACGCCAGATGCACTGGCCGCCGGGCTGA
Translation:
MDCLFCKIVAGEVPARKFYEDEEVVAFHDIGPQAPVHFLVIPKRHIPTLEHLTEADRPLAGHILFTAQRLAR
EQGCEEGFRVVMNCNDLGGQTVHHIHMHVLGQRQMHWPPG*
AnnotationID:4898GeneID:4893
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:28
Gene Name:
Confidence Code:3
GeneProduct:putative HIT family protein
Cell Localization:()
Synonyms:PA0656
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01276,pfam01230,cd01277
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54142.1| (AE016858) HIT family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 112

 Score =  181 bits (460), Expect = 5e-46
 Identities = 85/112 (75%), Positives = 96/112 (85%)

>gb|AAN66058.1|AE016234_11 (AE016775) HIT family protein [Pseudomonas putida KT2440]
          Length = 112

 Score =  179 bits (453), Expect = 3e-45
 Identities = 84/112 (75%), Positives = 94/112 (83%)

>dbj|BAB81730.1| (AP003192) probable HIT family protein [Clostridium perfringens
           str. 13]
          Length = 114

 Score =  149 bits (376), Expect = 3e-36
 Identities = 66/112 (58%), Positives = 85/112 (75%), Gaps = 1/112 (0%)








 
Structural Features:
cd01276, Protein Kinase C Interacting protein related (PKCI)
CD-Length = 104 residues,  99.0% aligned
Score =  155 bits (394), Expect = 9e-40

pfam01230, HIT, HIT domain.
CD-Length = 105 residues, 100.0% aligned
Score =  108 bits (271), Expect = 2e-25
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 6/108 (5%)

cd01277, HINT (histidine triad nucleotide-binding protein) subgroup
CD-Length = 103 residues,  98.1% aligned
Score = 96.0 bits (239), Expect = 8e-22






   
Genomic Context:






   
Comment:


















    ReferenceID:9786




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26927




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34610




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4893_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4893
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7274
                           PA0656_tr
                           translation of PA0656
                           112
                           99.99
                           99.99
                           0
                           619.0
     

     
     
189467
                           gb|AAG04045.1|AE004500_11
                           (AE004500) probable HIT family protein [Pseudomonas aeruginosa PAO1]
                           112
                           99.99
                           99.99
                           0
                           619.0
     

     
     
189468
                           gb|AAO54142.1|
                           (AE016858) HIT family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           112
                           75.89
                           85.71
                           0
                           460.0
     

     
     
189469
                           gb|AAN66058.1|AE016234_11
                           (AE016775) HIT family protein [Pseudomonas putida KT2440]
                           112
                           75.00
                           83.92
                           0
                           453.0
     

     
     
189470
                           dbj|BAB81730.1|
                           (AP003192) probable HIT family protein [Clostridium perfringens str. 13]
                           114
                           57.89
                           74.56
                           2
                           377.0
     

     






      

          
GC ORFID: 47895How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0656Glimmer Score: 

          
Start: 6521947Stop: 6521609

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0656 translation of PA0656Homolog Bit Score 243.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2399 (ORF: BLASTX 181.0), t_PA0656 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTGTCTGTTCTGCAAGATCGTGGCGGGGGAAGTTCCCGCGCGCAAGTTCTACGAAGACGAGGAAGTT 
GTCGCGTTTCACGATATCGGCCCGCAGGCGCCGGTGCACTTCCTGGTCATCCCGAAAAGGCACATTCCCACC 
CTCGAGCACCTGACCGAGGCAGACCGGCCGCTGGCAGGCCATATCCTCTTCACCGCCCAGCGCCTGGCCCGG 
GAGCAGGGCTGCGAGGAAGGCTTCCGTGTGGTGATGAACTGCAACGACCTTGGCGGGCAGACCGTGCACCAC 
ATCCACATGCACGTGCTGGGTCAACGCCAGATGCACTGGCCGCCGGGCTGA