ViewGene
Locus Name:
GeneID:
Location:

GeneID:4892
TrivialName: PA14_64000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64000
PAO1 Ortholog Locus:PA4840
Sequence Length:372
Protein Length:123
Start: 5704564
Stop: 5704193
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08225.1|AE004897_3 (AE004897) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/123 (98%), Positives = 121/123 (98%)
Sequence:
GTGGTCAAAAAAGCTTCGTCCCTGTCCGCCCTCGGCGGGCTGGTGTATTCCACGGATGGCGGCCGGCATTGC
CCGGACTGCCAGCAACCCAAAGACGCCTGCATCTGCGGGCAGGCCGTAGCGCCTGCCGGCGACGGGATCGCG
CGCGTGCGCCGCGAGACCAAGGGCCGCGGCGGCAAGACGGTGACCACCATCAGTGGCCTGCCGCTCGCCGGC
GATGCGCTCAAGGAGCTGGCCAGCGCGCTGAAGCGGCGCTGCGGCACTGGCGGCAGTCTCAAGGACGGCGTG
GTGGAGATCCAGGGCGAGCATGTCGAACTGCTGATCGACGAACTCCTCAAGCGCGGTTTCAAGGCGAAGAAG
TCCGGCGGCTGA
Translation:
MVKKASSLSALGGLVYSTDGGRHCPDCQQPKDACICGQAVAPAGDGIARVRRETKGRGGKTVTTISGLPLAG
DALKELASALKRRCGTGGSLKDGVVEIQGEHVELLIDELLKRGFKAKKSGG*
AnnotationID:4897GeneID:4892
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:15
Gene Name:
Confidence Code:3
GeneProduct:putative translation initiation factor SUI1
Cell Localization:()
Synonyms:PA4840
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01253,cd00474
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66193.1|AE016247_3 (AE016776) translation initiation factor SUI1 [Pseudomonas putida
           KT2440]
          Length = 123

 Score =  203 bits (517), Expect = 1e-52
 Identities = 97/123 (78%), Positives = 107/123 (86%)

>gb|AAO58270.1| (AE016873) translation initiation factor SUI1, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 123

 Score =  197 bits (500), Expect = 1e-50
 Identities = 94/123 (76%), Positives = 107/123 (86%)

>gb|AAP96171.1| (AE017154) conserved possible translation initiation factor
           [Haemophilus ducreyi 35000HP]
          Length = 103

 Score = 92.8 bits (229), Expect = 3e-19
 Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 9/110 (8%)








 
Structural Features:
pfam01253, SUI1, Translation initiation factor SUI1.
CD-Length = 83 residues, 100.0% aligned
Score = 69.1 bits (169), Expect = 1e-13
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

cd00474, SUI1_eIF1, The SUI1/eIF1 (eukaryotic initiation factor 1) 
CD-Length = 77 residues,  89.6% aligned
Score = 68.7 bits (168), Expect = 2e-13
Identities = 30/69 (43%), Positives = 44/69 (63%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15202




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26925




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35215




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4892_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4892
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7273
                           PA4840_tr
                           translation of PA4840
                           123
                           98.37
                           98.37
                           0
                           620.0
     

     
     
189462
                           gb|AAG08225.1|AE004897_3
                           (AE004897) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           123
                           97.56
                           98.37
                           0
                           617.0
     

     
     
189463
                           gb|AAN66193.1|AE016247_3
                           (AE016776) translation initiation factor SUI1 [Pseudomonas putida KT2440]
                           123
                           78.04
                           86.99
                           0
                           513.0
     

     
     
189464
                           gb|AAO58270.1|
                           (AE016873) translation initiation factor SUI1, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           123
                           75.60
                           86.99
                           0
                           496.0
     

     
     
189466
                           gb|AAR34021.1|
                           (AE017209) translation initation factor SUI1, putative [Geobacter sulfurreducens PCA]
                           124
                           57.25
                           73.38
                           4
                           353.0
     

     






      

          
GC ORFID: 47894How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4840Glimmer Score: 

          
Start: 4968244Stop: 4967873

          
Length: 372


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4840 translation of PA4840Homolog Bit Score 243.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5751 (ORF: BLASTX 197.0), t_PA4840 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTCAAAAAAGCTTCGTCCCTGTCCGCCCTCGGCGGGCTGGTGTATTCCACGGATGGCGGCCGGCATTGC 
CCGGACTGCCAGCAACCCAAAGACGCCTGCATCTGCGGGCAGGCCGTAGCGCCTGCCGGCGACGGGATCGCG 
CGCGTGCGCCGCGAGACCAAGGGCCGCGGCGGCAAGACGGTGACCACCATCAGTGGCCTGCCGCTCGCCGGC 
GATGCGCTCAAGGAGCTGGCCAGCGCGCTGAAGCGGCGCTGCGGCACTGGCGGCAGTCTCAAGGACGGCGTG 
GTGGAGATCCAGGGCGAGCATGTCGAACTGCTGATCGACGAACTCCTCAAGCGCGGTTTCAAGGCGAAGAAG 
TCCGGCGGCTGA