ViewGene
Locus Name:
GeneID:
Location:

GeneID:4891
TrivialName: PA14_62360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62360
PAO1 Ortholog Locus:PA4711
Sequence Length:348
Protein Length:115
Start: 5563545
Stop: 5563892
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08097.1|AE004885_2 (AE004885) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/115 (99%), Positives = 114/115 (99%)
Sequence:
ATGATCCCGGCAAACGGAGCGCCCATGATCCACCTGTGTCCCTCTTCCCATCTCGCCGAAGGCAACAGCCGC
GGCTTCCTCGTCGATGAGCGGCGGCTGTTCGCGGTGCGTCGCGACGGCCGCGCCTACATCTACCTGAACCGC
TGCCCGCATCGCGGCATCCCGTTGGAGTGGCAGCCCGATGCCTTCCTCGACGACAGCGCCAGCCTGATCCGT
TGCGCCAGCCACGGCGCGCTGTTCCTCATCGAGTCCGGCGAGTGCGTCGCCGGCCCCTGCGCTGGCGAGCGC
TTGCGCGCCCTGCCCTGCCGGGAAGACGCCGAAGGCCTCTGGGTGGAGCTGGACGACTGA
Translation:
MIPANGAPMIHLCPSSHLAEGNSRGFLVDERRLFAVRRDGRAYIYLNRCPHRGIPLEWQPDAFLDDSASLIR
CASHGALFLIESGECVAGPCAGERLRALPCREDAEGLWVELDD*
AnnotationID:4896GeneID:4891
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative iron-sulfur cluster-binding protein, Rieske family
Cell Localization:()
Synonyms:PA4711
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2146
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54506.1| (AE016859) iron-sulfur cluster-binding protein, Rieske family
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 110

 Score =  159 bits (401), Expect = 4e-39
 Identities = 75/107 (70%), Positives = 81/107 (75%)

>gb|AAN70263.1|AE016666_7 (AE016791) Rieske 2Fe-2S family protein [Pseudomonas putida KT2440]
          Length = 114

 Score =  149 bits (377), Expect = 2e-36
 Identities = 70/102 (68%), Positives = 77/102 (75%)






 
Structural Features:
COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and 
ring-hydroxylating dioxygenases 
[Inorganic ion transport and metabolism]
CD-Length = 106 residues, 100.0% aligned
Score = 87.3 bits (216), Expect = 4e-19
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 6/111 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9782




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26923




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37633




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4891_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4891
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7272
                           PA4711_tr
                           translation of PA4711
                           115
                           99.13
                           99.13
                           0
                           620.0
     

     
     
189459
                           gb|AAG08097.1|AE004885_2
                           (AE004885) hypothetical protein PA4711 [Pseudomonas aeruginosa PAO1]
                           115
                           99.13
                           99.13
                           0
                           620.0
     

     
     
189460
                           gb|AAO54506.1|
                           (AE016859) iron-sulfur cluster-binding protein, Rieske family [Pseudomonas syringae pv. tomato str. DC3000]
                           118
                           63.55
                           68.64
                           11
                           401.0
     

     
     
189461
                           gb|AAN70263.1|AE016666_7
                           (AE016791) Rieske 2Fe-2S family protein [Pseudomonas putida KT2440]
                           122
                           57.37
                           63.93
                           15
                           371.0
     

     






      

          
GC ORFID: 47893How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4711Glimmer Score: 

          
Start: 4827225Stop: 4827572

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4711 translation of PA4711Homolog Bit Score 243.0

          
Other Homologs:  t_PA4711 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCCGGCAAACGGAGCGCCCATGATCCACCTGTGTCCCTCTTCCCATCTCGCCGAAGGCAACAGCCGC 
GGCTTCCTCGTCGATGAGCGGCGGCTGTTCGCGGTGCGTCGCGACGGCCGCGCCTACATCTACCTGAACCGC 
TGCCCGCATCGCGGCATCCCGTTGGAGTGGCAGCCCGATGCCTTCCTCGACGACAGCGCCAGCCTGATCCGT 
TGCGCCAGCCACGGCGCGCTGTTCCTCATCGAGTCCGGCGAGTGCGTCGCCGGCCCCTGCGCTGGCGAGCGC 
TTGCGCGCCCTGCCCTGCCGGGAAGACGCCGAAGGCCTCTGGGTGGAGCTGGACGACTGA