ViewGene

Locus Name:
GeneID:
Location:

GeneID:4890
TrivialName: PA14_48980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48980
PAO1 Ortholog Locus:PA0719
Sequence Length:378
Protein Length:125
Start: 4352431
Stop: 4352054
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04108.1|AE004507_7 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 122/125 (97%), Positives = 122/125 (97%)
Sequence:
ATGCTCGCTGACACCCTGAAAGCGCTGCTCCTGCTCTGCCTGATCCAGGCCGCCCGCACCGTGGCCGATCCG
GTCAAGGGCCGCGCTCCCGGCTCGTCGGAACAGCTTCACCGTTCCGGCGAACGGAAGCACGGGCGCAGCGCA
CCCTTGAACGCCTCCCCCCTGAAACAGCCTCCGCTGGGGAGTGTGGGGCAGCTCCTCCGCCCCGCGCTCCCG
AGCCCTCGGCGGCAAGAGCGGGATGACAAGGGCAGAGCCCTTGGTGTTGCTCTGCGGGTTCCAAGGGGAAGC
GTTCCCCTTGGCCGTCGGAGACGACGTTGCGATAGGGATCGTTACCCGAATGGGCCGAGACGAACACCTGTG
GTTGGCTTGGTTCGCTAG
Translation:
MLADTLKALLLLCLIQAARTVADPVKGRAPGSSEQLHRSGERKHGRSAPLNASPLKQPPLGSVGQLLRPALP
SPRRQERDDKGRALGVALRVPRGSVPLGRRRRRCDRDRYPNGPRRTPVVGLVR*
AnnotationID:4895GeneID:4890
AnnotatorUID: danlee
Modification Date/Time: 2006-04-12 17:05:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein of bacteriophage Pf1
Cell Localization:()
Synonyms:PA0719
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAG04108.1|AE004507_7 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas
           aeruginosa PAO1]
          Length = 125

 Score =  243 bits (619), Expect = 2e-64
 Identities = 122/125 (97%), Positives = 122/125 (97%)
N-termina
Structural Features:
Genomic Context:
cluster of genes from bacteriophage Pf1
Comment:
ReferenceID:9780
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26921
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4890

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7271 PA0719_tr translation of PA0719 125 97.60 97.60 0 619.0
189458 gb|AAG04108.1|AE004507_7 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1] 125 97.60 97.60 0 619.0
GC ORFID: 47892How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0719Glimmer Score:
Start: 601477Stop: 601854
Length: 378
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0719 translation of PA0719Homolog Bit Score 243.0
Other Homologs:
GC ORF Sequence
ATGCTCGCTGACACCCTGAAAGCGCTGCTCCTGCTCTGCCTGATCCAGGCCGCCCGCACCGTGGCCGATCCG
GTCAAGGGCCGCGCTCCCGGCTCGTCGGAACAGCTTCACCGTTCCGGCGAACGGAAGCACGGGCGCAGCGCA
CCCTTGAACGCCTCCCCCCTGAAACAGCCTCCGCTGGGGAGTGTGGGGCAGCTCCTCCGCCCCGCGCTCCCG
AGCCCTCGGCGGCAAGAGCGGGATGACAAGGGCAGAGCCCTTGGTGTTGCTCTGCGGGTTCCAAGGGGAAGC
GTTCCCCTTGGCCGTCGGAGACGACGTTGCGATAGGGATCGTTACCCGAATGGGCCGAGACGAACACCTGTG
GTTGGCTTGGTTCGCTAG