ViewGene

Locus Name:
GeneID:
Location:

GeneID:4889
TrivialName: PA14_52890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52890
PAO1 Ortholog Locus:PA0880
Sequence Length:381
Protein Length:126
Start: 4689046
Stop: 4688666
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04269.1|AE004522_11 (AE004522) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 124/126 (98%), Positives = 124/126 (98%)
Sequence:
ATGCAGATCGACCGTCTCGACCACCTGGTGCTCACCGTCCGCGACATCGACGCCAGCATCGATTTCTACACC
CGCGTACTGGGTATGCGCGCCGTTACCTTCGGCGCGGGTCGCAAGGCCCTCGCCTTCGGTGCGCAGAAGATC
AACCTGCACCAGGCCGGGGGCGAATTCGAACCCAAGGCCGAGCGACCTACGCCGGGGTCCGCCGACCTCTGT
TTCATCGTCGCCACGCCACTCGAGGCGGTGGCCGAGCAACTGCGCCAGCAGGCCGTGGAAATCCTCGAGGGC
CCGGTGCCGCGCACCGGCGCCGGCGGGCCGATCCTCTCGCTGTACCTGCGCGACCCCGACCTGAACCTGATC
GAACTGAGCAACCTGCTGTAG
Translation:
MQIDRLDHLVLTVRDIDASIDFYTRVLGMRAVTFGAGRKALAFGAQKINLHQAGGEFEPKAERPTPGSADLC
FIVATPLEAVAEQLRQQAVEILEGPVPRTGAGGPILSLYLRDPDLNLIELSNLL*
AnnotationID:4894GeneID:4889
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 13:01:07
Gene Name:
Confidence Code:3
GeneProduct:probable ring-cleaving dioxygenase
Cell Localization:()
Synonyms:PA0880
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein.  Score: 60.5, 1e-10
COG0346, GloA, Lactoylglutathione lyase and related lyases. Score: 54.8, 6e-09
Genomic Context:
Comment:
ReferenceID:9778
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26919
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4889

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7270 PA0880_tr translation of PA0880 126 98.41 98.41 0 620.0
189440 gb|AAG04269.1|AE004522_11 (AE004522) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1] 126 98.41 98.41 0 620.0
189445 emb|CAD18381.1| (AL646083) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 127 62.20 70.07 2 381.0
189443 gb|AAN54788.1|AE015618_9 (AE015618) glyoxalase family protein [Shewanella oneidensis MR-1] 131 61.83 72.51 5 404.0
189450 gb|AAO10670.1|AE016804_180 (AE016804) Lactoylglutathione lyase [Vibrio vulnificus CMCP6] 127 59.84 70.07 1 375.0
GC ORFID: 47891How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0880Glimmer Score:
Start: 264861Stop: 265241
Length: 381
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0880 translation of PA0880Homolog Bit Score 243.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1754 (ORF: BLASTX 151.0)
GC ORF Sequence
ATGCAGATCGACCGTCTCGACCACCTGGTGCTCACCGTCCGCGACATCGACGCCAGCATCGATTTCTACACC
CGCGTACTGGGTATGCGCGCCGTTACCTTCGGCGCGGGTCGCAAGGCCCTCGCCTTCGGTGCGCAGAAGATC
AACCTGCACCAGGCCGGGGGCGAATTCGAACCCAAGGCCGAGCGACCTACGCCGGGGTCCGCCGACCTCTGT
TTCATCGTCGCCACGCCACTCGAGGCGGTGGCCGAGCAACTGCGCCAGCAGGCCGTGGAAATCCTCGAGGGC
CCGGTGCCGCGCACCGGCGCCGGCGGGCCGATCCTCTCGCTGTACCTGCGCGACCCCGACCTGAACCTGATC
GAACTGAGCAACCTGCTGTAG