ViewGene
Locus Name:
GeneID:
Location:

GeneID:4888
TrivialName: PA14_63360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63360
PAO1 Ortholog Locus:PA4795
Sequence Length:378
Protein Length:125
Start: 5653351
Stop: 5653728
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08181.1|AE004892_12 (AE004892) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/125 (100%), Positives = 125/125 (100%)
Sequence:
TTGAACCCTGACACCCACGCCCAGCGCGTCCTCATCATCGTCTCCAGCGGCCCGAGCACCCCGGCCCGCTGC
GCCGCGCCCTTCCACACCGCCACCCTGCTGGCCTGCATGGACGCCGAGGTGACCCTGTTCCTCAGCGGCGAA
GGCGTGCAGTTGGCCCGCCGCGCCGTCGCCGACCAGTTGCGCGCGCTGGACGGCGGCGAGCCGCTGCGCCAC
TTCATCCGCCAGGCCCGCGAGGCCGGCGCGCGCCTGCTGATGTGCCGCCAACCCGGGGTGAACATCGACGAA
AGCGAACTGATCGAGGAACTCGACGAAATCTCCAGCGGCGGCGAACTGGCACGGCTGATCCTCGAATCCGAG
CGGGTGCTGACCCTATGA
Translation:
MNPDTHAQRVLIIVSSGPSTPARCAAPFHTATLLACMDAEVTLFLSGEGVQLARRAVADQLRALDGGEPLRH
FIRQAREAGARLLMCRQPGVNIDESELIEELDEISSGGELARLILESERVLTL*
AnnotationID:4893GeneID:4888
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 08:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative peroxiredoxin
Cell Localization:()
Synonyms:PA4795
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2044
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2044, COG2044, Predicted peroxiredoxins
CD-Length = 120 residues, 100.0% aligned
Score =  130 bits (328), Expect = 5e-32
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 2/121 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15200




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37680




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4888_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4888
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7269
                           PA4795_tr
                           translation of PA4795
                           125
                           99.99
                           99.99
                           0
                           622.0
     

     
     
189439
                           gb|AAG08181.1|AE004892_12
                           (AE004892) hypothetical protein PA4795 [Pseudomonas aeruginosa PAO1]
                           125
                           99.20
                           99.99
                           0
                           620.0
     

     






      

          
GC ORFID: 47890How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4795Glimmer Score: 

          
Start: 4917031Stop: 4917408

          
Length: 378


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4795 translation of PA4795Homolog Bit Score 244.0

          
Other Homologs:  t_PA4795 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAACCCTGACACCCACGCCCAGCGCGTCCTCATCATCGTCTCCAGCGGCCCGAGCACCCCGGCCCGCTGC 
GCCGCGCCCTTCCACACCGCCACCCTGCTGGCCTGCATGGACGCCGAGGTGACCCTGTTCCTCAGCGGCGAA 
GGCGTGCAGTTGGCCCGCCGCGCCGTCGCCGACCAGTTGCGCGCGCTGGACGGCGGCGAGCCGCTGCGCCAC 
TTCATCCGCCAGGCCCGCGAGGCCGGCGCGCGCCTGCTGATGTGCCGCCAACCCGGGGTGAACATCGACGAA 
AGCGAACTGATCGAGGAACTCGACGAAATCTCCAGCGGCGGCGAACTGGCACGGCTGATCCTCGAATCCGAG 
CGGGTGCTGACCCTATGA