ViewGene
Locus Name:
GeneID:
Location:

GeneID:4887
TrivialName: PA14_13870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13870
PAO1 Ortholog Locus:PA3869
Sequence Length:384
Protein Length:127
Start: 1193000
Stop: 1192617
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07256.1|AE004804_4 (AE004804) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/127 (97%), Positives = 124/127 (97%)
Sequence:
ATGGCCATCGAGAAGCACAACATCAAGCTGGCCACCTTCATCGCCGCGCTCTTCTATGACCTTTCCACCCAG
AAACAGGTACGCATTCCCACCCAGATCGAAAAACGGGATCGCGAACTGTACGAACTGGTAAAGAAGAGCAAG
CGCCCCGTGGCCCTGTTCGTTGATGAAGCCCATGATCTCAATGGCCATACCTTGACCGGTCTGAAGCGACTG
CTCGAACTGGCCGAAGACGACAGCGGCCGGCGACGCTTGTCCATTGTCCTGGCTGGCCATCCCAAGCTGTGT
AACGATCTGCGCCGCCCCACGATGGAAGAAATTGGTTACCGCACCGACATTTTCGAGTTGCAGGAAAAGATG
CAAAGTGCCGGATTACAGGTATGA
Translation:
MAIEKHNIKLATFIAALFYDLSTQKQVRIPTQIEKRDRELYELVKKSKRPVALFVDEAHDLNGHTLTGLKRL
LELAEDDSGRRRLSIVLAGHPKLCNDLRRPTMEEIGYRTDIFELQEKMQSAGLQV*
AnnotationID:4892GeneID:4887
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 09:09:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3869
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9774




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26915




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31695




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4887_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4887
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7268
                           PA3869_tr
                           translation of PA3869
                           127
                           97.63
                           97.63
                           0
                           624.0
     

     
     
189434
                           gb|AAG07256.1|AE004804_4
                           (AE004804) hypothetical protein PA3869 [Pseudomonas aeruginosa PAO1]
                           127
                           97.63
                           97.63
                           0
                           624.0
     

     
     
189435
                           gb|AAF23986.1|
                           (AF043544) unknown [Pseudomonas sp. TW3]
                           328
                           30.48
                           33.53
                           206
                           483.0
     

     
     
189437
                           dbj|BAB20555.1|
                           (AB040415) orf48 [Salmonella enterica subsp. enterica serovar Choleraesuis]
                           320
                           26.25
                           31.56
                           195
                           410.0
     

     
     
189438
                           gb|AAD47204.1|AF141883_2
                           (AF141883) unknown [Pseudomonas syringae pv. phaseolicola] [Pseudomonas savastanoi pv. phaseolicola]
                           253
                           25.69
                           27.27
                           174
                           308.0
     

     






      

          
GC ORFID: 47889How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3869Glimmer Score: 

          
Start: 3760938Stop: 3761321

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3869 translation of PA3869Homolog Bit Score 244.0

          
Other Homologs:  t_PA3869 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATCGAGAAGCACAACATCAAGCTGGCCACCTTCATCGCCGCGCTCTTCTATGACCTTTCCACCCAG 
AAACAGGTACGCATTCCCACCCAGATCGAAAAACGGGATCGCGAACTGTACGAACTGGTAAAGAAGAGCAAG 
CGCCCCGTGGCCCTGTTCGTTGATGAAGCCCATGATCTCAATGGCCATACCTTGACCGGTCTGAAGCGACTG 
CTCGAACTGGCCGAAGACGACAGCGGCCGGCGACGCTTGTCCATTGTCCTGGCTGGCCATCCCAAGCTGTGT 
AACGATCTGCGCCGCCCCACGATGGAAGAAATTGGTTACCGCACCGACATTTTCGAGTTGCAGGAAAAGATG 
CAAAGTGCCGGATTACAGGTATGA