ViewGene
Locus Name:
GeneID:
Location:

GeneID:4886
TrivialName: PA14_42520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42520
PAO1 Ortholog Locus:PA1701
Sequence Length:366
Protein Length:121
Start: 3786096
Stop: 3785731
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05090.1|AE004597_4 (AE004597) conserved hypothetical protein in type III secretion [Pseudomonas aeruginosa PAO1]
Identities = 120/121 (99%), Positives = 120/121 (99%)
Sequence:
ATGAGCCGGGTCGGTGCCTGGCACATCGGCATCGAACGACTCGACCTGGCGCATGCCGAGCCGTTCGCGCCG
CCCCTGCCGGAGCGCCATCTACTGGCGCCCGACGGCCGGCCGGTCGAGACCCACGTCGCCAGCCTGTATCCC
GCGCAGCAGGCGCAACAGCGCCTGTTCGACTACGCCCGGCCCCAGCTGGAGTTCCACGGCCTGCTGCGCCCC
GGCGACTTCCGCCAGGCGCTGCGCGATCTCCGCCTGGCCCTCACGCTGCCCGGCCAGCCAGCCCTGCAGGCT
GCGGCCTGCCTGCTCGGCGAGCGCGACGAAGACGAGCGACTGCTGCAAATGGCCCTGAACCTGTTGCACAAG
GTATGA
Translation:
MSRVGAWHIGIERLDLAHAEPFAPPLPERHLLAPDGRPVETHVASLYPAQQAQQRLFDYARPQLEFHGLLRP
GDFRQALRDLRLALTLPGQPALQAAACLLGERDEDERLLQMALNLLHKV*
AnnotationID:4891GeneID:4886
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 06:06:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:pcr3
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18048.1| (AY144116) LssB [Photorhabdus luminescens]
          Length = 121

 Score =  116 bits (290), Expect = 3e-26
 Identities = 63/121 (52%), Positives = 78/121 (64%)

>emb|CAD30216.1| (AJ458292) AscX protein [Aeromonas salmonicida subsp. salmonicida]
          Length = 121

 Score =  109 bits (273), Expect = 2e-24
 Identities = 58/121 (47%), Positives = 76/121 (62%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
other possible gene names: sctX, yscX


















    ReferenceID:9772




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26913




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4886
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7267
                           PA1701_tr
                           translation of PA1701
                           121
                           99.17
                           99.17
                           0
                           623.0
     

     
     
189423
                           gb|AAG05090.1|AE004597_4
                           (AE004597) conserved hypothetical protein in type III secretion [Pseudomonas aeruginosa PAO1]
                           121
                           99.17
                           99.17
                           0
                           623.0
     

     
     
189424
                           gb|AAC45942.1|
                           (AF010150) Pcr3 [Pseudomonas aeruginosa]
                           121
                           99.17
                           99.17
                           0
                           623.0
     

     
     
189425
                           gb|AAO18048.1|
                           (AY144116) LssB [Photorhabdus luminescens]
                           121
                           52.06
                           64.46
                           0
                           290.0
     

     
     
189426
                           emb|CAE16135.1|
                           (BX571871) Type III secretion protein SctX [Photorhabdus luminescens subsp. laumondii TTO1]
                           121
                           52.06
                           63.63
                           0
                           289.0
     

     






      

          
GC ORFID: 47888How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1701Glimmer Score: 

          
Start: 1167813Stop: 1168178

          
Length: 366


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1701 translation of PA1701Homolog Bit Score 244.0

          
Other Homologs:  t_PA1701 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGGGTCGGTGCCTGGCACATCGGCATCGAACGACTCGACCTGGCGCATGCCGAGCCGTTCGCGCCG 
CCCCTGCCGGAGCGCCATCTACTGGCGCCCGACGGCCGGCCGGTCGAGACCCACGTCGCCAGCCTGTATCCC 
GCGCAGCAGGCGCAACAGCGCCTGTTCGACTACGCCCGGCCCCAGCTGGAGTTCCACGGCCTGCTGCGCCCC 
GGCGACTTCCGCCAGGCGCTGCGCGATCTCCGCCTGGCCCTCACGCTGCCCGGCCAGCCAGCCCTGCAGGCT 
GCGGCCTGCCTGCTCGGCGAGCGCGACGAAGACGAGCGACTGCTGCAAATGGCCCTGAACCTGTTGCACAAG 
GTATGA