ViewGene
Locus Name:
GeneID:
Location:

GeneID:4885
TrivialName: PA14_50250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50250
PAO1 Ortholog Locus:PA1095
Sequence Length:381
Protein Length:126
Start: 4463325
Stop: 4462945
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04484.1|AE004540_4 (AE004540) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/126 (100%), Positives = 126/126 (100%)
Sequence:
ATGTACGCGATGAAAGCGATGAAGCAATACCAGCAGGTCAGCATCGAGGCTCAGGTTTCCGATGCCAACCCG
CACCGTCTGATCCAACTGCTCATGCAGGGTGGTCTGGAGCGTCTGGCCCAGGCGCGTGGTGCGATGGAGCGG
GAGCAGATCCCGGAAAAGGGGATCCTGATCGGCAAGGCCATCGGCATCATCGGCGGCCTTCGCGAAGCGCTG
GACAGCGAGCGTGGTGGCGAGCTGGCCGGCAATCTGGATCGTCTCTACGAGTACATGATCGCTCGTCTGGTC
GAGGCCAATACCAGCAACGATACCAGCCTGCTAGACGAGGTCAGCGCCCTGTTGTTGGAAGTGAAGTCCGGT
TGGGACGGTATTTCGCACTGA
Translation:
MYAMKAMKQYQQVSIEAQVSDANPHRLIQLLMQGGLERLAQARGAMEREQIPEKGILIGKAIGIIGGLREAL
DSERGGELAGNLDRLYEYMIARLVEANTSNDTSLLDEVSALLLEVKSGWDGISH*
AnnotationID:4890GeneID:4885
AnnotatorUID: danlee
Modification Date/Time: 2004-05-26 22:10:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1095, fliS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1516
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1516, FliS, Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular 
trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
             CD-Length = 132 residues,  92.4% aligned
             Score =  137 bits (347), Expect = 3e-34






   
Genomic Context:






   
Comment:


















    ReferenceID:9770




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26911




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4885
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7266
                           PA1095_tr
                           translation of PA1095
                           126
                           99.99
                           99.99
                           0
                           624.0
     

     
     
189397
                           gb|AAG04484.1|AE004540_4
                           (AE004540) hypothetical protein PA1095 [Pseudomonas aeruginosa PAO1]
                           126
                           99.99
                           99.99
                           0
                           624.0
     

     
     
189398
                           gb|AAA99301.1|
                           (L43064) putative [Pseudomonas aeruginosa]
                           126
                           65.87
                           76.19
                           0
                           413.0
     

     
     
189399
                           gb|AAC09393.1|
                           (L81176) unknown [Pseudomonas aeruginosa]
                           126
                           65.87
                           76.19
                           0
                           413.0
     

     
     
189400
                           gb|AAO55470.1|
                           (AE016862) flagellar protein FliS [Pseudomonas syringae pv. tomato str. DC3000]
                           129
                           52.71
                           69.76
                           3
                           357.0
     

     






      

          
GC ORFID: 47887How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1095Glimmer Score: 

          
Start: 490583Stop: 490963

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1095 translation of PA1095Homolog Bit Score 244.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7912 (ORF: BLASTX 140.0), t_PA1095 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGCGATGAAAGCGATGAAGCAATACCAGCAGGTCAGCATCGAGGCTCAGGTTTCCGATGCCAACCCG 
CACCGTCTGATCCAACTGCTCATGCAGGGTGGTCTGGAGCGTCTGGCCCAGGCGCGTGGTGCGATGGAGCGG 
GAGCAGATCCCGGAAAAGGGGATCCTGATCGGCAAGGCCATCGGCATCATCGGCGGCCTTCGCGAAGCGCTG 
GACAGCGAGCGTGGTGGCGAGCTGGCCGGCAATCTGGATCGTCTCTACGAGTACATGATCGCTCGTCTGGTC 
GAGGCCAATACCAGCAACGATACCAGCCTGCTAGACGAGGTCAGCGCCCTGTTGTTGGAAGTGAAGTCCGGT 
TGGGACGGTATTTCGCACTGA