ViewGene
Locus Name:
GeneID:
Location:

GeneID:4883
TrivialName: PA14_42020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42020
PAO1 Ortholog Locus:PA1741
Sequence Length:372
Protein Length:123
Start: 3748639
Stop: 3749010
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05130.1|AE004600_6 (AE004600) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/123 (100%), Positives = 123/123 (100%)
Sequence:
ATGTTGCTCAAGGCAGTACGTAACGGACTGGGTCAGGCGATTATCCTCGCCGACTTCGTCAGCCGCCCCCGC
AAGCTGCAGCGCAGCGCCGAGGCCCAGGCCGAGGTCGAGCGGGCGCTGCGGAACCTGTCGCTCTACCAGTTC
CGCGCCTGTCCGTTCTGCGTGAAGACACGCCGCGCCATGCACCGGCTGAACCTGCCGATGCAACTCAAGGAC
GCCATGAACGATCCGCAGGCCCGCCAGGCTTTGCTGGAAGGCGGCGGCAAGGTCAAGGTGCCGTGCCTGCGC
ATCGAGGAAAACGGCCAGGTGCGCTGGATGTACGAATCCAGCGAGATCATCGCCTATCTGGAAGGCCGTTTC
GCCAACGCCTGA
Translation:
MLLKAVRNGLGQAIILADFVSRPRKLQRSAEAQAEVERALRNLSLYQFRACPFCVKTRRAMHRLNLPMQLKD
AMNDPQARQALLEGGGKVKVPCLRIEENGQVRWMYESSEIIAYLEGRFANA*
AnnotationID:4888GeneID:4883
AnnotatorUID: diggins
Modification Date/Time: 2005-06-02 20:08:30
Gene Name:
Confidence Code:3
GeneProduct:putative glutaredoxin
Cell Localization:()
Synonyms:arsC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:arsenate reductase
Functional Category Confidence Code:5
COGs:COG0695
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:1.20.4.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO07472.1|AE016809_234 (AE016809) Glutaredoxin [Vibrio vulnificus CMCP6]
          Length = 119

 Score =  141 bits (356), Expect = 6e-34
 Identities = 67/118 (56%), Positives = 90/118 (76%)







 
Structural Features:
COG0695, GrxC, Glutaredoxin and related proteins 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 80 residues,  96.2% aligned
Score = 56.1 bits (135), Expect = 1e-09
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9766




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26907




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37116




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4883_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4883
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7264
                           PA1741_tr
                           translation of PA1741
                           123
                           99.99
                           99.99
                           0
                           625.0
     

     
     
189388
                           gb|AAG05130.1|AE004600_6
                           (AE004600) hypothetical protein PA1741 [Pseudomonas aeruginosa PAO1]
                           123
                           99.99
                           99.99
                           0
                           625.0
     

     
     
189389
                           gb|AAN67441.1|AE016371_7
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           123
                           65.04
                           79.67
                           0
                           427.0
     

     
     
189390
                           gb|AAO55552.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           58.40
                           72.00
                           2
                           379.0
     

     
     
189391
                           gb|AAO07472.1|AE016809_234
                           (AE016809) Glutaredoxin [Vibrio vulnificus CMCP6]
                           123
                           54.47
                           73.17
                           4
                           355.0
     

     






      

          
GC ORFID: 47885How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1741Glimmer Score: 

          
Start: 1205270Stop: 1204899

          
Length: 372


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1741 translation of PA1741Homolog Bit Score 245.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene562 (ORF: BLASTX 142.0), t_PA1741 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCTCAAGGCAGTACGTAACGGACTGGGTCAGGCGATTATCCTCGCCGACTTCGTCAGCCGCCCCCGC 
AAGCTGCAGCGCAGCGCCGAGGCCCAGGCCGAGGTCGAGCGGGCGCTGCGGAACCTGTCGCTCTACCAGTTC 
CGCGCCTGTCCGTTCTGCGTGAAGACACGCCGCGCCATGCACCGGCTGAACCTGCCGATGCAACTCAAGGAC 
GCCATGAACGATCCGCAGGCCCGCCAGGCTTTGCTGGAAGGCGGCGGCAAGGTCAAGGTGCCGTGCCTGCGC 
ATCGAGGAAAACGGCCAGGTGCGCTGGATGTACGAATCCAGCGAGATCATCGCCTATCTGGAAGGCCGTTTC 
GCCAACGCCTGA