ViewGene

Locus Name:
GeneID:
Location:

GeneID:4882
TrivialName: PA14_04960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04960
PAO1 Ortholog Locus:PA0379
Sequence Length:378
Protein Length:125
Start: 437716
Stop: 438093
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03768.1|AE004475_10 (AE004475) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/125 (100%), Positives = 125/125 (100%)
Sequence:
ATGCTTCGTCCCTTCCTGTTGTTGGCGGCATTTTTCGGTTTCACCGGCGTGGCCCTCGGGGCGTTCGCCGCC
CACGGCCTGAAGAAGCAGCTCAGCGCCGAGTACCTGGCGGTATTCCAGACCGGCGTGCACTACCAGTTGATC
CACGCCCTGGCGCTGTTCGGCGTGGCGCTGCTCGCCACCCGCCTGGACGGCCGCCTGGTGAGCGCGGCGGGT
GGCCTGTTCACGCTGGGCATCCTGCTGTTCTCCGGCAGCCTCTACCTGCTGACCCTCAGTGGCATCGGCAAG
CTCGGCATCGTCACCCCGTTCGGCGGCGTCTCCTTCCTCGCCGGCTGGCTGTGCCTGGGGCTGGCCGCCTGG
CGCCTGGGCAACGCCTGA
Translation:
MLRPFLLLAAFFGFTGVALGAFAAHGLKKQLSAEYLAVFQTGVHYQLIHALALFGVALLATRLDGRLVSAAG
GLFTLGILLFSGSLYLLTLSGIGKLGIVTPFGGVSFLAGWLCLGLAAWRLGNA*
AnnotationID:4887GeneID:4882
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0379
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2363
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2363, Uncharacterized small membrane protein
CD-Length = 124 residues, 100.0% aligned
Score = 94.1 bits (234), Expect = 5e-21
Identities = 69/125 (55%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Genomic Context:
Comment:
ReferenceID:9764
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26905
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33686
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4882_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4882

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7263 PA0379_tr translation of PA0379 125 99.99 99.99 0 628.0
189371 gb|AAG03768.1|AE004475_10 (AE004475) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 125 99.99 99.99 0 628.0
189372 gb|AAN70671.1|AE016710_16 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 125 77.60 88.00 2 511.0
189373 gb|AAO53976.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 126 76.98 87.30 1 491.0
189385 gb|AAN54595.1|AE015599_7 (AE015599) conserved hypothetical protein [Shewanella oneidensis MR-1] 130 49.23 53.07 5 269.0
GC ORFID: 47884How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0379Glimmer Score:
Start: 6239058Stop: 6239435
Length: 378
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0379 translation of PA0379Homolog Bit Score 246.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6616 (ORF: BLASTX 190.0)
GC ORF Sequence
ATGCTTCGTCCCTTCCTGTTGTTGGCGGCATTTTTCGGTTTCACCGGCGTGGCCCTCGGGGCGTTCGCCGCC
CACGGCCTGAAGAAGCAGCTCAGCGCCGAGTACCTGGCGGTATTCCAGACCGGCGTGCACTACCAGTTGATC
CACGCCCTGGCGCTGTTCGGCGTGGCGCTGCTCGCCACCCGCCTGGACGGCCGCCTGGTGAGCGCGGCGGGT
GGCCTGTTCACGCTGGGCATCCTGCTGTTCTCCGGCAGCCTCTACCTGCTGACCCTCAGTGGCATCGGCAAG
CTCGGCATCGTCACCCCGTTCGGCGGCGTCTCCTTCCTCGCCGGCTGGCTGTGCCTGGGGCTGGCCGCCTGG
CGCCTGGGCAACGCCTGA