ViewGene
Locus Name:
GeneID:
Location:

GeneID:4881
TrivialName: PA14_70400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70400
PAO1 Ortholog Locus:PA5333
Sequence Length:372
Protein Length:123
Start: 6276249
Stop: 6275878
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08718.1|AE004946_2 (AE004946) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/123 (100%), Positives = 123/123 (100%)
Sequence:
ATGAACGATGTATCCGAAGAGGTCGCCGCGACCCCCGGCCAGGAAGCCCGGCAATGGGCGATGTTCTGCCAT
TTCGCGGCATTCATCGGCCTGGTGTTTCCCTTCGGCAGCCTGCTCGGGCCGCTGATCGTCTGGCAACTCAAG
CGCGAGAGCGATCCGTTCGTCGACGCCCAGGGCAAGGAAGCGCTGAACTTCCAGATCACCGTGGCGCTGGCG
ATGTTCGTCAGCTTCCTGCTGATGCTGGTGGTGATCGGCTTCTTCCTGCTCGGCCTGGTCTGTCTGGCGGCG
CTGGTGTTGACCATCATCGCCGGCATCAAGGCCAACGAAGGCAAGGCCTATCGCTATCCGTTCTGCCTGCGG
CTGATCAAGTAG
Translation:
MNDVSEEVAATPGQEARQWAMFCHFAAFIGLVFPFGSLLGPLIVWQLKRESDPFVDAQGKEALNFQITVALA
MFVSFLLMLVVIGFFLLGLVCLAALVLTIIAGIKANEGKAYRYPFCLRLIK*
AnnotationID:4886GeneID:4881
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 18:06:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5333
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9762




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26903




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34716




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4881_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4881
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7262
                           PA5333_tr
                           translation of PA5333
                           123
                           99.99
                           99.99
                           0
                           627.0
     

     
     
189367
                           gb|AAG08718.1|AE004946_2
                           (AE004946) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           123
                           99.99
                           99.99
                           0
                           627.0
     

     
     
189368
                           gb|AAO53632.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           124
                           64.51
                           77.41
                           2
                           424.0
     

     
     
189369
                           gb|AAN70858.1|AE016730_4
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           123
                           57.72
                           72.35
                           1
                           378.0
     

     
     
189370
                           dbj|BAA16972.1|
                           (D90902) ORF_ID:slr0686~unknown protein [Synechocystis sp. PCC 6803]
                           126
                           44.44
                           63.49
                           10
                           281.0
     

     






      

          
GC ORFID: 47883How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5333Glimmer Score: 

          
Start: 5539938Stop: 5539567

          
Length: 372


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5333 translation of PA5333Homolog Bit Score 246.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3142 (ORF: BLASTX 169.0), t_PA5333 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATGTATCCGAAGAGGTCGCCGCGACCCCCGGCCAGGAAGCCCGGCAATGGGCGATGTTCTGCCAT 
TTCGCGGCATTCATCGGCCTGGTGTTTCCCTTCGGCAGCCTGCTCGGGCCGCTGATCGTCTGGCAACTCAAG 
CGCGAGAGCGATCCGTTCGTCGACGCCCAGGGCAAGGAAGCGCTGAACTTCCAGATCACCGTGGCGCTGGCG 
ATGTTCGTCAGCTTCCTGCTGATGCTGGTGGTGATCGGCTTCTTCCTGCTCGGCCTGGTCTGTCTGGCGGCG 
CTGGTGTTGACCATCATCGCCGGCATCAAGGCCAACGAAGGCAAGGCCTATCGCTATCCGTTCTGCCTGCGG 
CTGATCAAGTAG