ViewGene
Locus Name:
GeneID:
Location:

GeneID:4880
TrivialName: PA14_63430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63430
PAO1 Ortholog Locus:PA4801
Sequence Length:369
Protein Length:122
Start: 5657099
Stop: 5656731
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08187.1|AE004893_5 (AE004893) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/122 (97%), Positives = 120/122 (98%)
Sequence:
TTGCTTGGCGTCGCCGCGGACGAGACGCCGGCGCAGATCGTCGCCGCCATCACCGACTACGTGCGCGATGCG
AGGGAGCAGGGGCGCAGCCTCGACGACGAGGCGGTCTTCGCCCTCGGCGCGCTGATCGGCGCGCAGTACGTG
CGTGGCCTCGGCTGGCACTGGGGCGACGTGATCTGGGACGGCGACCCGGACAGCGCCGCCGTCGGCGTGCTC
AGCCCCGACGAATCGCTGTTCAACAACCCCATCGGCTGGGTAAGCCAGATCGCCGAAAGCGGCGGCGGGGTG
CCGTTCATGCTCAGCTACAACATGATCCTGGCCAACCAGGTGCCGCTGTTCGAGCGAGGCAGCGCCACCGGT
CTCTATTGA
Translation:
MLGVAADETPAQIVAAITDYVRDAREQGRSLDDEAVFALGALIGAQYVRGLGWHWGDVIWDGDPDSAAVGVL
SPDESLFNNPIGWVSQIAESGGGVPFMLSYNMILANQVPLFERGSATGLY*
AnnotationID:4885GeneID:4880
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:08
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:PA4801
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15198




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26901




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4880
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7261
                           PA4801_tr
                           translation of PA4801
                           122
                           97.54
                           98.36
                           0
                           627.0
     

     
     
189366
                           gb|AAG08187.1|AE004893_5
                           (AE004893) hypothetical protein PA4801 [Pseudomonas aeruginosa PAO1]
                           122
                           96.72
                           98.36
                           0
                           625.0
     

     






      

          
GC ORFID: 47882How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4801Glimmer Score: 

          
Start: 4920779Stop: 4920411

          
Length: 369


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4801 translation of PA4801Homolog Bit Score 246.0

          
Other Homologs:  t_PA4801 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCTTGGCGTCGCCGCGGACGAGACGCCGGCGCAGATCGTCGCCGCCATCACCGACTACGTGCGCGATGCG 
AGGGAGCAGGGGCGCAGCCTCGACGACGAGGCGGTCTTCGCCCTCGGCGCGCTGATCGGCGCGCAGTACGTG 
CGTGGCCTCGGCTGGCACTGGGGCGACGTGATCTGGGACGGCGACCCGGACAGCGCCGCCGTCGGCGTGCTC 
AGCCCCGACGAATCGCTGTTCAACAACCCCATCGGCTGGGTAAGCCAGATCGCCGAAAGCGGCGGCGGGGTG 
CCGTTCATGCTCAGCTACAACATGATCCTGGCCAACCAGGTGCCGCTGTTCGAGCGAGGCAGCGCCACCGGT 
CTCTATTGA