ViewGene
Locus Name:
GeneID:
Location:

GeneID:4879
TrivialName: PA14_62810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62810
PAO1 Ortholog Locus:PA4747
Sequence Length:390
Protein Length:129
Start: 5604672
Stop: 5604283
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08133.1|AE004888_8 (AE004888) secretion protein SecG [Pseudomonas aeruginosa PAO1]
Identities = 128/129 (99%), Positives = 129/129 (100%)
Sequence:
ATGCTGGAAAAGGTCGTAATTGTCGTGCATCTGCTGATGGCATTGGGTCTTGTTGGCCTGATCCTCGTTCAG
CATGGCAAGGGTGCGGATGCAGGGGCTTCTTTCGGTGCAGGTGCTTCGGCAACTGTTTTCGGAAGCCAAGGT
TCCGCTACCTTTTTGAGTCGGATTACTGGTATACTGGCAGCGGTTTTTTTCTTGACCAGCCTTGGCTTAGCG
TACTTCGCTAAAGAAAAGTCTGATGCTCTGCAACACATCGGACTGCCGGATCCGGCAGTTCTGGAGCAGAAG
CAAGAGAAAGCACCGGCCGCTGACGATGTGCCGGTTCTTCAGGAGCAGTCCAGGCCTGCGGAAAGTGCAGGC
GATGTACCGGCGGCTCCTGAACAGAAGTAA
Translation:
MLEKVVIVVHLLMALGLVGLILVQHGKGADAGASFGAGASATVFGSQGSATFLSRITGILAAVFFLTSLGLA
YFAKEKSDALQHIGLPDPAVLEQKQEKAPAADDVPVLQEQSRPAESAGDVPAAPEQK*
AnnotationID:4884GeneID:4879
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 09:09:55
Gene Name:secG
Confidence Code:2
GeneProduct:secretion protein SecG
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:preprotein translocase, SecG subunit
Functional Category Confidence Code:5
COGs:pfam03840,COG1314
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57941.1| (AE016872) preprotein translocase, SecG subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 126

 Score =  167 bits (424), Expect = 7e-42
 Identities = 90/129 (69%), Positives = 103/129 (79%), Gaps = 3/129 (2%)

>gb|AAO10109.1|AE016802_152 (AE016802) Preprotein translocase subunit SecG [Vibrio vulnificus
           CMCP6]
          Length = 110

 Score =  100 bits (248), Expect = 2e-21
 Identities = 55/107 (51%), Positives = 77/107 (71%), Gaps = 5/107 (4%)

>gb|AAO70746.1| (AE016844) export membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 110

 Score = 99.0 bits (245), Expect = 4e-21
 Identities = 54/107 (50%), Positives = 73/107 (68%), Gaps = 3/107 (2%)








 
Structural Features:
pfam03840, SecG, Preprotein translocase SecG subunit.
CD-Length = 74 residues,  97.3% aligned
Score = 80.9 bits (200), Expect = 4e-17
Identities = 32/72 (44%), Positives = 54/72 (75%)

COG1314, SecG, Preprotein translocase subunit SecG 
[Intracellular trafficking and secretion]
CD-Length = 86 residues,  86.0% aligned
Score = 76.0 bits (187), Expect = 1e-15
Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9758




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26899




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37667




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4879_cdd.html


    		




 
URL:

















    ReferenceID:37725




  
Author/Investigator(s):
        Bost S, Belin D.





  
Title:
        A new genetic selection identifies essential residues in SecG, a component of the Escherichia coli protein export machinery.




  
PubMed:
        7556084


MedLine:
        




    
Source:
EMBO J. 1995 Sep 15;14(18):4412-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=96003621&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4879
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7260
                           PA4747_tr
                           translation of PA4747
                           129
                           99.22
                           99.99
                           0
                           629.0
     

     
     
189361
                           gb|AAG08133.1|AE004888_8
                           (AE004888) secretion protein SecG [Pseudomonas aeruginosa PAO1]
                           129
                           99.22
                           99.99
                           0
                           629.0
     

     
     
189362
                           gb|AAC45132.1|
                           (U85643) SecG [Pseudomonas syringae pv. syringae]
                           129
                           70.54
                           80.62
                           3
                           433.0
     

     
     
189363
                           gb|AAO57941.1|
                           (AE016872) preprotein translocase, SecG subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           129
                           69.76
                           79.84
                           3
                           428.0
     

     
     
189364
                           gb|AAO10109.1|AE016802_152
                           (AE016802) Preprotein translocase subunit SecG [Vibrio vulnificus CMCP6]
                           133
                           41.35
                           58.64
                           27
                           252.0
     

     






      

          
GC ORFID: 47881How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4747Glimmer Score: 

          
Start: 4868352Stop: 4867963

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4747 translation of PA4747Homolog Bit Score 246.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5489 (ORF: BLASTX 169.0)

          
GC ORF Sequence

           
ATGCTGGAAAAGGTCGTAATTGTCGTGCATCTGCTGATGGCATTGGGTCTTGTTGGCCTGATCCTCGTTCAG 
CATGGCAAGGGTGCGGATGCAGGGGCTTCTTTCGGTGCAGGTGCTTCGGCAACTGTTTTCGGAAGCCAAGGT 
TCCGCTACCTTTTTGAGTCGGATTACTGGTATACTGGCAGCGGTTTTTTTCTTGACCAGCCTTGGCTTAGCG 
TACTTCGCTAAAGAAAAGTCTGATGCTCTGCAACACATCGGACTGCCGGATCCGGCAGTTCTGGAGCAGAAG 
CAAGAGAAAGCACCGGCCGCTGACGATGTGCCGGTTCTTCAGGAGCAGTCCAGGCCTGCGGAAAGTGCAGGC 
GATGTACCGGCGGCTCCTGAACAGAAGTAA