ViewGene
Locus Name:
GeneID:
Location:

GeneID:4878
TrivialName: PA14_34670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34670
PAO1 Ortholog Locus:PA2318
Sequence Length:366
Protein Length:121
Start: 3079537
Stop: 3079172
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05706.1|AE004657_13 (AE004657) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/121 (100%), Positives = 121/121 (100%)
Sequence:
ATGGCCATTACCGTTATCCGCCACGGCATCACCCTCGACGAACTGGACGCCTGGGGCAGCGTCGCCGACCTC
GGCTCGGAGATCCTCGAAGGCGAGGTGAAAGCCTTCGGCAAGATGACCGCCGGAGCCCCCACCGACCCGGTC
AGCGCCGCCTACTTCGGCACCACCGCCGGCAAGTTTCGCATGACCTATCCGTTCAGCGAACAGGCCACGGTG
GTCAGCGGCGAGGTCCGCCTCACCGACGAGTCCACCGGCCAGAGCACGCTCTACAAGGCCGGCGACAGCTGG
TTCGTCAGCAAGGGCACCCCGGTGCTCTGGGAGGTTGCCGACGGCGGCTTCGTCAAGCATTACTACGCGGTG
GCTTGA
Translation:
MAITVIRHGITLDELDAWGSVADLGSEILEGEVKAFGKMTAGAPTDPVSAAYFGTTAGKFRMTYPFSEQATV
VSGEVRLTDESTGQSTLYKAGDSWFVSKGTPVLWEVADGGFVKHYYAVA*
AnnotationID:4883GeneID:4878
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:57
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme of the cupin superfamily
Cell Localization:()
Synonyms:PA2318
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3450
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3450, Predicted enzyme of the cupin superfamily
CD-Length = 116 residues, 100.0% aligned
Score = 93.5 bits (232), Expect = 6e-21
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 5/121 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9756




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32474




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4878_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4878
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7259
                           PA2318_tr
                           translation of PA2318
                           121
                           99.99
                           99.99
                           0
                           628.0
     

     
     
189359
                           gb|AAG05706.1|AE004657_13
                           (AE004657) hypothetical protein PA2318 [Pseudomonas aeruginosa PAO1]
                           121
                           99.99
                           99.99
                           0
                           628.0
     

     
     
189360
                           emb|CAE16658.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           123
                           44.71
                           57.72
                           3
                           265.0
     

     






      

          
GC ORFID: 47880How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2318Glimmer Score: 

          
Start: 1874379Stop: 1874744

          
Length: 366


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2318 translation of PA2318Homolog Bit Score 246.0

          
Other Homologs:  t_PA2318 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATTACCGTTATCCGCCACGGCATCACCCTCGACGAACTGGACGCCTGGGGCAGCGTCGCCGACCTC 
GGCTCGGAGATCCTCGAAGGCGAGGTGAAAGCCTTCGGCAAGATGACCGCCGGAGCCCCCACCGACCCGGTC 
AGCGCCGCCTACTTCGGCACCACCGCCGGCAAGTTTCGCATGACCTATCCGTTCAGCGAACAGGCCACGGTG 
GTCAGCGGCGAGGTCCGCCTCACCGACGAGTCCACCGGCCAGAGCACGCTCTACAAGGCCGGCGACAGCTGG 
TTCGTCAGCAAGGGCACCCCGGTGCTCTGGGAGGTTGCCGACGGCGGCTTCGTCAAGCATTACTACGCGGTG 
GCTTGA