ViewGene

Locus Name:
GeneID:
Location:

GeneID:4877
TrivialName: PA14_41910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41910
PAO1 Ortholog Locus:PA1751
Sequence Length:378
Protein Length:125
Start: 3742540
Stop: 3742163
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05140.1|AE004601_5 (AE004601) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/125 (96%), Positives = 122/125 (97%)
Sequence:
ATGGTCGGGCCCCATTTCTTCCTTTCTATCGAGGTCAGCAGCGTGCCGTCCCTGGAACTCACCGATCTGGAC
GCCGACCGGCAGTTGCTTGCCCTGGAAGGGGTTTCGCTGTTGGTATTCACCAGCGAAGGCTGCGCGTCGTGC
CGCTGGGCCCGGCGCCATCTCCCCGCGATGGACCTGCCCATCGAGCGCCTGTGCTGGGTGGACGCCGGCCGC
AATGGCGGCCTGGTGGAACGCTACGGCGTCTTTCACCTGCCGGCCCTGTTCATGGTCCGCGACGGCCGCCTC
CATGGCGCACTGAACGTTCCGCTGCACCAGGAAGCCTTGCGGGGTGCGGTGCTGGCGGGGTCGACCGCTTTA
CCTGAGGAGTTGCCCTGA
Translation:
MVGPHFFLSIEVSSVPSLELTDLDADRQLLALEGVSLLVFTSEGCASCRWARRHLPAMDLPIERLCWVDAGR
NGGLVERYGVFHLPALFMVRDGRLHGALNVPLHQEALRGAVLAGSTALPEELP*
AnnotationID:4882GeneID:4877
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 21:09:38
Gene Name:
Confidence Code:3
GeneProduct:putative thioredoxin
Cell Localization:()
Synonyms:PA1751
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE32925.1| (BX640444) putative thioredoxin [Bordetella bronchiseptica]
          Length = 111

 Score =  119 bits (299), Expect = 2e-27
 Identities = 59/108 (54%), Positives = 73/108 (67%)

>emb|CAE36667.1| (BX640427) putative thioredoxin [Bordetella parapertussis]
          Length = 111

 Score =  119 bits (299), Expect = 2e-27
 Identities = 59/108 (54%), Positives = 73/108 (67%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:9754
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26895
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4877

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7258 PA1751_tr translation of PA1751 125 96.80 97.60 0 629.0
189356 gb|AAG05140.1|AE004601_5 (AE004601) hypothetical protein PA1751 [Pseudomonas aeruginosa PAO1] 125 96.80 97.60 0 629.0
189357 emb|CAE32925.1| (BX640444) putative thioredoxin [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 125 47.20 59.20 14 299.0
189358 emb|CAE36667.1| (BX640427) putative thioredoxin [Bordetella parapertussis] 125 47.20 59.20 14 299.0
GC ORFID: 47879How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1751Glimmer Score:
Start: 1211369Stop: 1211746
Length: 378
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1751 translation of PA1751Homolog Bit Score 246.0
Other Homologs: t_PA1751 (ORF: GLIMMER)
GC ORF Sequence
ATGGTCGGGCCCCATTTCTTCCTTTCTATCGAGGTCAGCAGCGTGCCGTCCCTGGAACTCACCGATCTGGAC
GCCGACCGGCAGTTGCTTGCCCTGGAAGGGGTTTCGCTGTTGGTATTCACCAGCGAAGGCTGCGCGTCGTGC
CGCTGGGCCCGGCGCCATCTCCCCGCGATGGACCTGCCCATCGAGCGCCTGTGCTGGGTGGACGCCGGCCGC
AATGGCGGCCTGGTGGAACGCTACGGCGTCTTTCACCTGCCGGCCCTGTTCATGGTCCGCGACGGCCGCCTC
CATGGCGCACTGAACGTTCCGCTGCACCAGGAAGCCTTGCGGGGTGCGGTGCTGGCGGGGTCGACCGCTTTA
CCTGAGGAGTTGCCCTGA