ViewGene

Locus Name:
GeneID:
Location:

GeneID:4875
TrivialName: PA14_45620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45620
PAO1 Ortholog Locus:PA1456
Sequence Length:375
Protein Length:124
Start: 4058574
Stop: 4058200
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04845.1|AE004575_4 (AE004575) two-component response regulator CheY [Pseudomonas aeruginosa PAO1]
Identities = 124/124 (100%), Positives = 124/124 (100%)
Sequence:
ATGAAAATTCTCATCGTGGACGACTTTTCCACGATGAGACGCATCATCAAGAACCTCTTGCGGGACTTGGGC
TTCACCAATACCGCCGAGGCCGACGACGGCACCACGGCGCTGCCGATGCTGCACAGCGGCAATTTCGACTTT
CTCGTCACCGACTGGAACATGCCGGGCATGACCGGCATCGATCTGCTGCGCGCGGTTCGCGCCGACGAGCGC
CTCAAGCACCTGCCGGTGCTGATGGTCACCGCCGAGGCCAAGCGCGACCAGATCATCGAAGCGGCCCAGGCC
GGGGTCAACGGCTATGTGGTCAAACCCTTCACCGCTCAGGTCCTGAAGGAAAAGATCGAGAAGATTTTCGAG
CGGGTCAACGGCTGA
Translation:
MKILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTGIDLLRAVRADER
LKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFERVNG*
AnnotationID:4880GeneID:4875
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 12:12:16
Gene Name:cheY
Confidence Code:1
GeneProduct:two-component response regulator CheY
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:chemotaxis protein CheY
Functional Category Confidence Code:5
COGs:cd00156
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAF67045.1|AF183382_5 (AF183382) response regulator CheY [Pseudomonas putida]
          Length = 124

 Score =  225 bits (573), Expect = 4e-59
 Identities = 113/124 (91%), Positives = 119/124 (95%)

>gb|AAO55498.1| (AE016862) chemotaxis protein CheY [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 124

 Score =  224 bits (571), Expect = 7e-59
 Identities = 114/123 (92%), Positives = 117/123 (95%)

>gb|AAN56208.1|AE015758_12 (AE015758) chemotaxis protein CheY [Shewanella oneidensis MR-1]
          Length = 127

 Score =  210 bits (534), Expect = 1e-54
 Identities = 103/122 (84%), Positives = 113/122 (92%)
Structural Features:
cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  100 bits (250), Expect = 6e-23
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Genomic Context:
Comment:
ReferenceID:9750
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26891
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36497
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4875_cdd.html
URL:
ReferenceID:36563
Author/Investigator(s): Masduki A, Nakamura J, Ohga T, Umezaki R, Kato J, Ohtake H.
Title: Isolation and characterization of chemotaxis mutants and genes of Pseudomonas aeruginosa.
PubMed: 7860605
MedLine:
Source:
J Bacteriol. 1995 Feb;177(4):948-52.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7860605
Homologs By Global Alignment
Gene ID:4875

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7256 PA1456_tr translation of PA1456 124 99.99 99.99 0 627.0
189267 gb|AAG04845.1|AE004575_4 (AE004575) two-component response regulator CheY [Pseudomonas aeruginosa PAO1] 124 99.99 99.99 0 627.0
189268 emb|CAA43549.1| (X61231) CheY [Pseudomonas aeruginosa] 124 99.99 99.99 0 627.0
189271 gb|AAO55498.1| (AE016862) chemotaxis protein CheY [Pseudomonas syringae pv. tomato str. DC3000] 124 91.93 94.35 0 571.0
189269 gb|AAF67045.1|AF183382_5 (AF183382) response regulator CheY [Pseudomonas putida] 124 91.12 95.96 0 573.0
GC ORFID: 47877How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1456Glimmer Score:
Start: 895335Stop: 895709
Length: 375
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1456 translation of PA1456Homolog Bit Score 246.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7940 (ORF: BLASTX 228.0), t_PA1456 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAATTCTCATCGTGGACGACTTTTCCACGATGAGACGCATCATCAAGAACCTCTTGCGGGACTTGGGC
TTCACCAATACCGCCGAGGCCGACGACGGCACCACGGCGCTGCCGATGCTGCACAGCGGCAATTTCGACTTT
CTCGTCACCGACTGGAACATGCCGGGCATGACCGGCATCGATCTGCTGCGCGCGGTTCGCGCCGACGAGCGC
CTCAAGCACCTGCCGGTGCTGATGGTCACCGCCGAGGCCAAGCGCGACCAGATCATCGAAGCGGCCCAGGCC
GGGGTCAACGGCTATGTGGTCAAACCCTTCACCGCTCAGGTCCTGAAGGAAAAGATCGAGAAGATTTTCGAG
CGGGTCAACGGCTGA