ViewGene
Locus Name:
GeneID:
Location:

GeneID:4874
TrivialName: PA14_46760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46760
PAO1 Ortholog Locus:PA1355
Sequence Length:381
Protein Length:126
Start: 4166133
Stop: 4165753
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04744.1|AE004565_3 (AE004565) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 122/126 (96%), Positives = 122/126 (96%)
Sequence:
ATGGGCGACGAGCGTCGCTGCGGAGTGTGCCGACCGCTGGGCGGGCCGCGCCAGCCGTGGCCTGCAGGGCTT
CTACACTGTTCCAGCAGAACCATTTCCGCGAGCCTCGGCATGCCCCGTATCGTCTTCGCCCCGGCCATCCAG
CGGCATGTCGCCATGCCCGCGCTGGATGTCGGCGCCGCCACCGTCGCCGCCGCCTTGCAGGCGGCCTTCGCC
CGCGAGCCGCGCTTGCGCGGCTACCTGCTCGACGACCAGGGCAGCCTGCGCCGGCATGTGGCGCTGTTCGTC
GATGGCGTGCAGGTCCGCGATCGCCGGGGATTGGGCGATCCGCTCCAAGACGATAGCGAGATCTACGTGGTG
CAGGCGCTGAGCGGCGGTTGA
Translation:
MGDERRCGVCRPLGGPRQPWPAGLLHCSSRTISASLGMPRIVFAPAIQRHVAMPALDVGAATVAAALQAAFA
REPRLRGYLLDDQGSLRRHVALFVDGVQVRDRRGLGDPLQDDSEIYVVQALSGG*
AnnotationID:4879GeneID:4874
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1355
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9748




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26889




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4874
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7255
                           PA1355_tr
                           translation of PA1355
                           126
                           96.82
                           96.82
                           0
                           627.0
     

     
     
189264
                           gb|AAG04744.1|AE004565_3
                           (AE004565) hypothetical protein PA1355 [Pseudomonas aeruginosa PAO1]
                           126
                           96.82
                           96.82
                           0
                           627.0
     

     
     
189265
                           emb|CAD18495.1|
                           (AL646084) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           133
                           42.85
                           57.14
                           26
                           273.0
     

     
     
189266
                           emb|CAD18464.1|
                           (AL646084) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           126
                           41.26
                           54.76
                           37
                           275.0
     

     






      

          
GC ORFID: 47876How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1355Glimmer Score: 

          
Start: 787776Stop: 788156

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1355 translation of PA1355Homolog Bit Score 246.0

          
Other Homologs:  t_PA1355 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGACGAGCGTCGCTGCGGAGTGTGCCGACCGCTGGGCGGGCCGCGCCAGCCGTGGCCTGCAGGGCTT 
CTACACTGTTCCAGCAGAACCATTTCCGCGAGCCTCGGCATGCCCCGTATCGTCTTCGCCCCGGCCATCCAG 
CGGCATGTCGCCATGCCCGCGCTGGATGTCGGCGCCGCCACCGTCGCCGCCGCCTTGCAGGCGGCCTTCGCC 
CGCGAGCCGCGCTTGCGCGGCTACCTGCTCGACGACCAGGGCAGCCTGCGCCGGCATGTGGCGCTGTTCGTC 
GATGGCGTGCAGGTCCGCGATCGCCGGGGATTGGGCGATCCGCTCCAAGACGATAGCGAGATCTACGTGGTG 
CAGGCGCTGAGCGGCGGTTGA