ViewGene
Locus Name:
GeneID:
Location:

GeneID:4873
TrivialName: PA14_73390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73390
PAO1 Ortholog Locus:PA5566
Sequence Length:384
Protein Length:127
Start: 6533310
Stop: 6532927
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08951.1|AE004968_5 (AE004968) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/127 (95%), Positives = 122/127 (96%)
Sequence:
GTGCACGCAAGACAACCCGGTAAGCGATTTACCCACAAGCCTGGAAGAGATTCTGCGAAAAGAGCTGTTGCA
GACCCTGGACTCCGTCGATACCGGCCAGGCGCGGCCCTCGCCTTCGGCTCCCAAGGCGTCCCAGGGCGAGCA
CTCGGACACTACAACATGGAGATCGTAGCCAACCTGGCGGTATGGCTCGGCGGCGAATGCCATGTCGGACAG
ATGATCGACTGGTTCGGCAGTTACGACCGCACTAGCGGGCTCAGTGCTCGGCTACTGCTGCGCAAACCCGCT
AACGAGGGCTCCGAGCGGGATTTCCAGGTCTCCGCCAAGCGCCGCTTCGAGCGCCTGTCGTCATCCATCGAT
ACGCTGGAAAGCGGCAACGACTGA
Translation:
MHARQPGKRFTHKPGRDSAKRAVADPGLRRYRPGAALAFGSQGVPGRALGHYNMEIVANLAVWLGGECHVGQ
MIDWFGSYDRTSGLSARLLLRKPANEGSERDFQVSAKRRFERLSSSIDTLESGND*
AnnotationID:4878GeneID:4873
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 09:09:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5566
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15194




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4873
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7254
                           PA5566_tr
                           translation of PA5566
                           127
                           95.27
                           96.06
                           0
                           630.0
     

     
     
189263
                           gb|AAG08951.1|AE004968_5
                           (AE004968) hypothetical protein PA5566 [Pseudomonas aeruginosa PAO1]
                           127
                           94.48
                           96.06
                           0
                           627.0
     

     






      

          
GC ORFID: 47875How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5566Glimmer Score: 

          
Start: 5796999Stop: 5796616

          
Length: 384


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5566 translation of PA5566Homolog Bit Score 247.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCACGCAAGACAACCCGGTAAGCGATTTACCCACAAGCCTGGAAGAGATTCTGCGAAAAGAGCTGTTGCA 
GACCCTGGACTCCGTCGATACCGGCCAGGCGCGGCCCTCGCCTTCGGCTCCCAAGGCGTCCCAGGGCGAGCA 
CTCGGACACTACAACATGGAGATCGTAGCCAACCTGGCGGTATGGCTCGGCGGCGAATGCCATGTCGGACAG 
ATGATCGACTGGTTCGGCAGTTACGACCGCACTAGCGGGCTCAGTGCTCGGCTACTGCTGCGCAAACCCGCT 
AACGAGGGCTCCGAGCGGGATTTCCAGGTCTCCGCCAAGCGCCGCTTCGAGCGCCTGTCGTCATCCATCGAT 
ACGCTGGAAAGCGGCAACGACTGA