ViewGene
Locus Name:
GeneID:
Location:

GeneID:487
TrivialName: PA14_16030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16030
PAO1 Ortholog Locus:PA3739
Sequence Length:1836
Protein Length:611
Start: 1366277
Stop: 1364442
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07126.1|AE004793_3 (AE004793) probable sodium/hydrogen antiporter [Pseudomonas aeruginosa PAO1]
Identities = 608/611 (99%), Positives = 610/611 (99%)
Sequence:
ATGGACCAGAACGCTATCCTGCTCGCCCTCGGCGGCATCGGTGCCGCCGCCCTGCTCAGTCAATGGCTGGCC
TGGCGCCTGCGCCTGCCAGCCATTCTTTTCCTGCTGCTGTCCGGGATCGTCGCCGGCCCCCTGCTCGGCTGG
CTCGATCCGGACGAGATGTTCGGCCCCCTGCTGTTCCCACTGGTATCCCTGGCAGTGGCGCTGATCCTCTTC
GAGGGCAGCCTGACCCTGCATTTCAGCGAATGGAAGGAAATCGGCACCGTGGTGCACCGAATGGTGACCATC
GGCGCGCTCTCGACCTGGGGCGTGATCGCCCTGGCCGCCCACTACCTGCTCGACTTCAGCTGGGAAATGGCC
CTGCTGTTCGGCACCCTGACCCTGGTCACCGGGCCCACGGTGATCGTCCCGATGCTGCGGGTGGTCCGGCCC
AAGGCCGCGGTGGCGAACATCCTGCGCTGGGAAGGCATCGTCATCGATCCCATCGGCGCCCTGCTGGCAGTA
GTGGTGTACAGCTTCATCATCTCCAGCGGCGAAGGCGAAGGCTGGCTGCACAGCCTGCAGACCTTCGGCGGG
GTGATCCTCTGCGGCAGCCTGTTCGGCATCCTCGGCGGCTGGGCGCTGGGCATCGTCCTACGCCGCCACTGG
CTGCCGGACTACCTGCACAACCTGGCGACGCTGGCCGCGGTGCTGGGCGTATTCATCGCCTCGAACCGGGTG
ATGCACGAATCCGGACTGCTCGCCGTCACCCTGATGGGCATGGGCCTGGCCAACATGAAGGGCGTCGACGTA
CGGCAGATCCTGCACTTCAAGGAAAACCTCAGCGTCCTGCTGATTTCCGGCCTGTTCATCCTCCTGGCCGCG
CGCCTGGACATCAATGCCCTGCTCGGCCTGGGCCCGGCGGCGCTGCTGGTGCTGCTGCTGATCCAGTTCGTC
GCCCGGCCGCTGAACGTGGCGCTGTCGACCTGGGGTTCGCCGCTGAGCTGGCGCGAGCGCGCCCTGCTCAGC
TGGATCGCCCCGCGCGGGATCGTCGCCGCGGCGGTCTCGGCGATCTTCGCCATCCGCCTGAGCGCCGAAGGC
CATGCCCAGGCGGCGCTGCTGGTGCCGCTGACCTTCCTGGTGATCATCGGCACGGTGGTTCTGCAAAGCGCC
ACCGCCCGCCCCCTGGCGCGCCTGCTGAAGGTCGCCGAGCCCTCGCCCAGCGGCTACCTGATCGTCGGCGCC
AATCCGGTCGGGCGCGCCATCGGCAAGGCCCTGAAGAGCCTCGGCAGCCGCGTGCTGCTGACTGATTCGAGC
TGGGAAAACATCCGCGCCGCCCGCATGGACAACCTGCCCACCTATTTCGGCAATCCCACCTCGCAGCACGCC
GAAGCCCACCTCGACCTGGTCGGCATCGGGCATTTGCTGGGGGTTTCTCCGGCCGGCGAGCTGAACACCCTG
GCGGCCATGCGCTTCCGCCACGAGTTCGGCCATCGCCAGTTGTTCGGCCTGCCGACCAGCCAGGAAGCCAAG
CGTACCGACAAGCACCGCTCCAGCGACGAACACCGTGGCCGCCCGCTTGGCCAGCGACCGCTGACCTACGCG
CAGTTCGCCAGCCTGCTGTCGCGCGGCGCCGAAATCCGCACCACCCTGCTCACCGACACCTTCGGCTGGAAC
GACTACCAGGCGCTGCACGGCGAGTCCGCGACCCTGCTGTTCGCCCGCGATCCGAACGGCAGGATGCACGTC
GCCACGCCACAGTCCACGCTGGCGCCGGGCACCGGCTGGACGCTGCTGTCGCTGATCGAGGCGGAACCGTCA
GTCAGCAAGTCGCAGGCCACGGAAATCGCCGACTAG
Translation:
MDQNAILLALGGIGAAALLSQWLAWRLRLPAILFLLLSGIVAGPLLGWLDPDEMFGPLLFPLVSLAVALILF
EGSLTLHFSEWKEIGTVVHRMVTIGALSTWGVIALAAHYLLDFSWEMALLFGTLTLVTGPTVIVPMLRVVRP
KAAVANILRWEGIVIDPIGALLAVVVYSFIISSGEGEGWLHSLQTFGGVILCGSLFGILGGWALGIVLRRHW
LPDYLHNLATLAAVLGVFIASNRVMHESGLLAVTLMGMGLANMKGVDVRQILHFKENLSVLLISGLFILLAA
RLDINALLGLGPAALLVLLLIQFVARPLNVALSTWGSPLSWRERALLSWIAPRGIVAAAVSAIFAIRLSAEG
HAQAALLVPLTFLVIIGTVVLQSATARPLARLLKVAEPSPSGYLIVGANPVGRAIGKALKSLGSRVLLTDSS
WENIRAARMDNLPTYFGNPTSQHAEAHLDLVGIGHLLGVSPAGELNTLAAMRFRHEFGHRQLFGLPTSQEAK
RTDKHRSSDEHRGRPLGQRPLTYAQFASLLSRGAEIRTTLLTDTFGWNDYQALHGESATLLFARDPNGRMHV
ATPQSTLAPGTGWTLLSLIEAEPSVSKSQATEIAD*
AnnotationID:496GeneID:487
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:15
Gene Name:
Confidence Code:3
GeneProduct:putative sodium/hydrogen exchanger
Cell Localization:()
Synonyms:PA3739
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0025,pfam00999
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67089.1|AE016337_12 (AE016779) sodium/hydrogen exchanger family protein [Pseudomonas
           putida KT2440]
          Length = 601

 Score =  888 bits (2295), Expect = 0.0
 Identities = 444/599 (74%), Positives = 513/599 (85%)

>gb|AAO09017.1|AE016798_177 (AE016798) NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio
           vulnificus CMCP6]
          Length = 598

 Score =  606 bits (1563), Expect = e-172
 Identities = 308/600 (51%), Positives = 423/600 (70%), Gaps = 6/600 (1%)








 
Structural Features:
COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters 
[Inorganic ion transport and metabolism]
CD-Length = 429 residues,  99.3% aligned
Score =  216 bits (552), Expect = 1e-56
Identities = 146/432 (33%), Positives = 204/432 (47%), Gaps = 23/432 (5%)

pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family.
CD-Length = 397 residues, 100.0% aligned
Score =  127 bits (320), Expect = 1e-29
Identities = 99/404 (24%), Positives = 166/404 (41%), Gaps = 25/404 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:977




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18119




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31818




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:487_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:487
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
852
                           PA3739_tr
                           translation of PA3739
                           611
                           99.50
                           99.83
                           0
                           3080.0
     

     
     
35438
                           gb|AAG07126.1|AE004793_3
                           (AE004793) probable sodium/hydrogen antiporter [Pseudomonas aeruginosa PAO1]
                           611
                           99.50
                           99.83
                           0
                           3080.0
     

     
     
35439
                           gb|AAN67089.1|AE016337_12
                           (AE016779) sodium/hydrogen exchanger family protein [Pseudomonas putida KT2440]
                           611
                           72.66
                           83.96
                           10
                           2293.0
     

     
     
35440
                           gb|AAF93854.1|
                           (AE004155) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           613
                           51.71
                           70.47
                           16
                           1580.0
     

     
     
35441
                           gb|AAO09017.1|AE016798_177
                           (AE016798) NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6]
                           613
                           50.24
                           69.16
                           17
                           1570.0
     

     






      

          
GC ORFID: 43489How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3739Glimmer Score: 

          
Start: 3587660Stop: 3589495

          
Length: 1836


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3739 translation of PA3739Homolog Bit Score 1191.0

          
Other Homologs:  t_PA3739 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCAGAACGCTATCCTGCTCGCCCTCGGCGGCATCGGTGCCGCCGCCCTGCTCAGTCAATGGCTGGCC 
TGGCGCCTGCGCCTGCCAGCCATTCTTTTCCTGCTGCTGTCCGGGATCGTCGCCGGCCCCCTGCTCGGCTGG 
CTCGATCCGGACGAGATGTTCGGCCCCCTGCTGTTCCCACTGGTATCCCTGGCAGTGGCGCTGATCCTCTTC 
GAGGGCAGCCTGACCCTGCATTTCAGCGAATGGAAGGAAATCGGCACCGTGGTGCACCGAATGGTGACCATC 
GGCGCGCTCTCGACCTGGGGCGTGATCGCCCTGGCCGCCCACTACCTGCTCGACTTCAGCTGGGAAATGGCC 
CTGCTGTTCGGCACCCTGACCCTGGTCACCGGGCCCACGGTGATCGTCCCGATGCTGCGGGTGGTCCGGCCC 
AAGGCCGCGGTGGCGAACATCCTGCGCTGGGAAGGCATCGTCATCGATCCCATCGGCGCCCTGCTGGCAGTA 
GTGGTGTACAGCTTCATCATCTCCAGCGGCGAAGGCGAAGGCTGGCTGCACAGCCTGCAGACCTTCGGCGGG 
GTGATCCTCTGCGGCAGCCTGTTCGGCATCCTCGGCGGCTGGGCGCTGGGCATCGTCCTACGCCGCCACTGG 
CTGCCGGACTACCTGCACAACCTGGCGACGCTGGCCGCGGTGCTGGGCGTATTCATCGCCTCGAACCGGGTG 
ATGCACGAATCCGGACTGCTCGCCGTCACCCTGATGGGCATGGGCCTGGCCAACATGAAGGGCGTCGACGTA 
CGGCAGATCCTGCACTTCAAGGAAAACCTCAGCGTCCTGCTGATTTCCGGCCTGTTCATCCTCCTGGCCGCG 
CGCCTGGACATCAATGCCCTGCTCGGCCTGGGCCCGGCGGCGCTGCTGGTGCTGCTGCTGATCCAGTTCGTC 
GCCCGGCCGCTGAACGTGGCGCTGTCGACCTGGGGTTCGCCGCTGAGCTGGCGCGAGCGCGCCCTGCTCAGC 
TGGATCGCCCCGCGCGGGATCGTCGCCGCGGCGGTCTCGGCGATCTTCGCCATCCGCCTGAGCGCCGAAGGC 
CATGCCCAGGCGGCGCTGCTGGTGCCGCTGACCTTCCTGGTGATCATCGGCACGGTGGTTCTGCAAAGCGCC 
ACCGCCCGCCCCCTGGCGCGCCTGCTGAAGGTCGCCGAGCCCTCGCCCAGCGGCTACCTGATCGTCGGCGCC 
AATCCGGTCGGGCGCGCCATCGGCAAGGCCCTGAAGAGCCTCGGCAGCCGCGTGCTGCTGACTGATTCGAGC 
TGGGAAAACATCCGCGCCGCCCGCATGGACAACCTGCCCACCTATTTCGGCAATCCCACCTCGCAGCACGCC 
GAAGCCCACCTCGACCTGGTCGGCATCGGGCATTTGCTGGGGGTTTCTCCGGCCGGCGAGCTGAACACCCTG 
GCGGCCATGCGCTTCCGCCACGAGTTCGGCCATCGCCAGTTGTTCGGCCTGCCGACCAGCCAGGAAGCCAAG 
CGTACCGACAAGCACCGCTCCAGCGACGAACACCGTGGCCGCCCGCTTGGCCAGCGACCGCTGACCTACGCG 
CAGTTCGCCAGCCTGCTGTCGCGCGGCGCCGAAATCCGCACCACCCTGCTCACCGACACCTTCGGCTGGAAC 
GACTACCAGGCGCTGCACGGCGAGTCCGCGACCCTGCTGTTCGCCCGCGATCCGAACGGCAGGATGCACGTC 
GCCACGCCACAGTCCACGCTGGCGCCGGGCACCGGCTGGACGCTGCTGTCGCTGATCGAGGCGGAACCGTCA 
GTCAGCAAGTCGCAGGCCACGGAAATCGCCGACTAG