ViewGene

Locus Name:
GeneID:
Location:

GeneID:4869
TrivialName: PA14_00600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00600
PAO1 Ortholog Locus:PA0048
Sequence Length:384
Protein Length:127
Start: 61148
Stop: 60765
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03438.1|AE004444_7 (AE004444) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 126/127 (99%), Positives = 127/127 (100%)
Sequence:
ATGAGCTTCGCGCAGAATCTCCTACGCCTACGCCAGCAGAACGCCCTGACCCAACGGCAGATGGCCGAGCGA
CTGGGCGTCACCGTGAGCCAGTTGCGGCACTTCGAAACCAAGGGCGGGCACCCGTCGCTGGTGGTGCTGCAA
ACCATCGCCGGACGTTTCGCGGTGCCCCTCGACTGGCTGGTCTGCGAGCGCAGCGAGCGGCAGGCGCTACCG
GAAGACCTGCGCCTGCAGTTCGAGGCCATCGGCCGCCTGCGGCTGGACGAGCGGCGCGCCATCCGGGCGTTG
CTCGACGACCTGATCCGCCAGTACATGGCCAAGCGCAACGCAGCGGCCAAGCCCCTCCCGGCGGCTTGCGCC
GAGGCCACGGAGACGTCCCCGTAG
Translation:
MSFAQNLLRLRQQNALTQRQMAERLGVTVSQLRHFETKGGHPSLVVLQTIAGRFAVPLDWLVCERSERQALP
EDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP*
AnnotationID:4874GeneID:4869
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:41
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0048
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. 
Prokaryotic DNA binding proteins belonging to the xenobiotic 
response element family of transcriptional regulators.
CD-Length = 58 residues, 100.0% aligned
Score = 47.1 bits (112), Expect = 6e-07
Identities = 22/58 (37%), Positives = 33/58 (56%)
Genomic Context:
Comment:
ReferenceID:9738
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26879
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33411
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4869_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4869

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7249 PA0048_tr translation of PA0048 127 99.21 99.99 0 634.0
189257 gb|AAG03438.1|AE004444_7 (AE004444) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 127 99.21 99.99 0 634.0
GC ORFID: 47871How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0048Glimmer Score:
Start: 5862485Stop: 5862102
Length: 384
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0048 translation of PA0048Homolog Bit Score 248.0
Other Homologs: t_PA0048 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCTTCGCGCAGAATCTCCTACGCCTACGCCAGCAGAACGCCCTGACCCAACGGCAGATGGCCGAGCGA
CTGGGCGTCACCGTGAGCCAGTTGCGGCACTTCGAAACCAAGGGCGGGCACCCGTCGCTGGTGGTGCTGCAA
ACCATCGCCGGACGTTTCGCGGTGCCCCTCGACTGGCTGGTCTGCGAGCGCAGCGAGCGGCAGGCGCTACCG
GAAGACCTGCGCCTGCAGTTCGAGGCCATCGGCCGCCTGCGGCTGGACGAGCGGCGCGCCATCCGGGCGTTG
CTCGACGACCTGATCCGCCAGTACATGGCCAAGCGCAACGCAGCGGCCAAGCCCCTCCCGGCGGCTTGCGCC
GAGGCCACGGAGACGTCCCCGTAG