ViewGene
Locus Name:
GeneID:
Location:

GeneID:4867
TrivialName: PA14_28500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28500
PAO1 Ortholog Locus:PA2753
Sequence Length:375
Protein Length:124
Start: 2459154
Stop: 2458780
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06141.1|AE004703_7 (AE004703) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/124 (100%), Positives = 124/124 (100%)
Sequence:
ATGTTCATTCCCGGCCATCTGCATCTCGCCTCGGCCAGCGAAGTCGACCGCCAGGCATTCGATATCCACCTG
CGCTACCGGGTCCTGGAGGCCGAGGCCCGCCCGGTGGCCGTACACTTCGACATGGAGGGCCGGATCGACGGC
CAGCCTTTCAGCGAAAGCTTCGAACTGCCACGCGACGCCGCCGTGCATTTCGCCAGCCGTGCCAGTCGCCTG
GCCCGGCGCCACGGCCTGCGCTTGCGGCAGGGACCGATCGTGCGCCAGCGCCGCGAGTACGACGCTATGTTC
GACGACCTGCGCCGACGCCTGAAACTCAAGAGCGGCGAAGCGATCGACCTCGACCGCTACCTGCGCGGCGAG
GCCGGGGCATCCTGA
Translation:
MFIPGHLHLASASEVDRQAFDIHLRYRVLEAEARPVAVHFDMEGRIDGQPFSESFELPRDAAVHFASRASRL
ARRHGLRLRQGPIVRQRREYDAMFDDLRRRLKLKSGEAIDLDRYLRGEAGAS*
AnnotationID:4872GeneID:4867
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 10:10:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2753
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9734




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26875




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4867
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7246
                           PA2753_tr
                           translation of PA2753
                           124
                           99.99
                           99.99
                           0
                           632.0
     

     
     
189157
                           gb|AAG06141.1|AE004703_7
                           (AE004703) hypothetical protein PA2753 [Pseudomonas aeruginosa PAO1]
                           124
                           99.99
                           99.99
                           0
                           632.0
     

     
     
7247
                           PA1076_tr
                           translation of PA1076
                           124
                           51.61
                           68.54
                           4
                           338.0
     

     
     
189158
                           gb|AAG04465.1|AE004539_7
                           (AE004539) hypothetical protein PA1076 [Pseudomonas aeruginosa PAO1]
                           124
                           51.61
                           68.54
                           4
                           338.0
     

     






      

          
GC ORFID: 47869How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2753Glimmer Score: 

          
Start: 2494772Stop: 2495146

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2753 translation of PA2753Homolog Bit Score 248.0

          
Other Homologs:  t_PA1076 (ORF: BLASTX 134.0), psyr_15may02_Scaffold3_revised_gene4960 (ORF: BLASTX 102.0), t_PA2753 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCATTCCCGGCCATCTGCATCTCGCCTCGGCCAGCGAAGTCGACCGCCAGGCATTCGATATCCACCTG 
CGCTACCGGGTCCTGGAGGCCGAGGCCCGCCCGGTGGCCGTACACTTCGACATGGAGGGCCGGATCGACGGC 
CAGCCTTTCAGCGAAAGCTTCGAACTGCCACGCGACGCCGCCGTGCATTTCGCCAGCCGTGCCAGTCGCCTG 
GCCCGGCGCCACGGCCTGCGCTTGCGGCAGGGACCGATCGTGCGCCAGCGCCGCGAGTACGACGCTATGTTC 
GACGACCTGCGCCGACGCCTGAAACTCAAGAGCGGCGAAGCGATCGACCTCGACCGCTACCTGCGCGGCGAG 
GCCGGGGCATCCTGA