ViewGene
Locus Name:
GeneID:
Location:

GeneID:4866
TrivialName: PA14_29040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29040
PAO1 Ortholog Locus:PA2715
Sequence Length:339
Protein Length:112
Start: 2511603
Stop: 2511265
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06103.1|AE004699_8 (AE004699) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 112/112 (100%), Positives = 112/112 (100%)
Sequence:
ATGACCTTCGTCGTGCTGGAAGAATGCATCCGCTGCAAACACACCGACTGCGTGGAAGTCTGTCCCGTGGAC
TGCTTCTACGAAGGCCCCAACTTCCTCGTCATCCACCCCGATGAATGCATCGACTGCGCGCTCTGCGAGCCG
GAATGCCCGGTCGCCGCGATTCGCGCCGAGGACGAGGTGCCGCTCGGGCAACGGCAGTTCATCGCCCTCAAT
GGCGAACTCGCCGCGCATCCCAACTGGACGCAGATCACCCGCAAGAAGCCGGCGCCCGACGACCACGACGCC
TGGTTCGGCCTGCCGGGCAAGCTGGCCGAACTCGACCGCAACGGCGCCTGA
Translation:
MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDEVPLGQRQFIALN
GELAAHPNWTQITRKKPAPDDHDAWFGLPGKLAELDRNGA*
AnnotationID:4871GeneID:4866
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 10:10:38
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA2715
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1146
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB62000.1| (AB054812) [3Fe-4S][4Fe-4S]ferredoxin [Pseudomonas putida]
          Length = 107

 Score =  163 bits (413), Expect = 2e-40
 Identities = 75/109 (68%), Positives = 84/109 (77%), Gaps = 2/109 (1%)

>gb|AAP97087.1| (AY336077) ferredoxin [Pseudomonas chlororaphis]
          Length = 107

 Score =  156 bits (395), Expect = 2e-38
 Identities = 72/109 (66%), Positives = 84/109 (77%), Gaps = 2/109 (1%)

>gb|AAA22125.1| (J03521) ferredoxin I [Azotobacter vinelandii]
          Length = 107

 Score =  155 bits (391), Expect = 5e-38
 Identities = 75/110 (68%), Positives = 83/110 (75%), Gaps = 4/110 (3%)






 
Structural Features:
COG1146, Ferredoxin [Energy production and conversion]
CD-Length = 68 residues,  79.4% aligned
Score = 53.1 bits (126), Expect = 7e-09
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 6/66 (9%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9732




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26873




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36310




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4866_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4866
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7244
                           PA2715_tr
                           translation of PA2715
                           112
                           99.99
                           99.99
                           0
                           632.0
     

     
     
189106
                           gb|AAG06103.1|AE004699_8
                           (AE004699) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           112
                           99.99
                           99.99
                           0
                           632.0
     

     
     
189109
                           dbj|BAB62000.1|
                           (AB054812) [3Fe-4S][4Fe-4S]ferredoxin [Pseudomonas putida]
                           112
                           66.96
                           75.00
                           5
                           415.0
     

     
     
189108
                           dbj|BAA92688.1|
                           (AB039965) ferrodoxin [Pseudomonas putida]
                           112
                           66.96
                           75.00
                           5
                           415.0
     

     
     
189107
                           gb|AAN67246.1|AE016351_8
                           (AE016780) ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
                           112
                           66.96
                           75.00
                           5
                           415.0
     

     






      

          
GC ORFID: 47868How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2715Glimmer Score: 

          
Start: 2442323Stop: 2442661

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2715 translation of PA2715Homolog Bit Score 248.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4780 (ORF: BLASTX 161.0), t_PA3621 (ORF: BLASTX 159.0), t_PA2715 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTCGTCGTGCTGGAAGAATGCATCCGCTGCAAACACACCGACTGCGTGGAAGTCTGTCCCGTGGAC 
TGCTTCTACGAAGGCCCCAACTTCCTCGTCATCCACCCCGATGAATGCATCGACTGCGCGCTCTGCGAGCCG 
GAATGCCCGGTCGCCGCGATTCGCGCCGAGGACGAGGTGCCGCTCGGGCAACGGCAGTTCATCGCCCTCAAT 
GGCGAACTCGCCGCGCATCCCAACTGGACGCAGATCACCCGCAAGAAGCCGGCGCCCGACGACCACGACGCC 
TGGTTCGGCCTGCCGGGCAAGCTGGCCGAACTCGACCGCAACGGCGCCTGA