ViewGene

Locus Name:
GeneID:
Location:

GeneID:4865
TrivialName: PA14_42530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42530
PAO1 Ortholog Locus:PA1700
Sequence Length:372
Protein Length:123
Start: 3786464
Stop: 3786093
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05089.1|AE004597_3 (AE004597) conserved hypothetical protein in type III secretion [Pseudomonas aeruginosa PAO1]
Identities = 122/123 (99%), Positives = 123/123 (100%)
Sequence:
ATGGACTGGGTTGAGCTGGCCGTCGCGCAGTTCTGCCAGGACCTGCGGGTGAGCGTACCGGCGCCGCTGGCG
CGCGTGGTGCAACTGGATTTCGAGGACAGCGGCACCTTGCAGCTGGAACGCCATGGCGAACAGTTGTCGCTC
TGGCTGGCCTGTGACCTGGCCTGGCACCAGGCCTATCGCGGAACGCTGCGGGCGTTGCGCCTGTGCCATGCG
CGCGCGGCCGGGAGCCTGCCGCTGCGTTGCGCCTGGAGCGGCGAATCGCGCCTGCTGCTGTGCATCACCCTG
GAAGCCCGGCAGGTCGGCATCCCGACGCTGCACCAGGCCTTGCAGGCGCTGCGCTCGGCGCGCAGCGAAGTG
CTCGCCGCATGA
Translation:
MDWVELAVAQFCQDLRVSVPAPLARVVQLDFEDSGTLQLERHGEQLSLWLACDLAWHQAYRGTLRALRLCHA
RAAGSLPLRCAWSGESRLLLCITLEARQVGIPTLHQALQALRSARSEVLAA*
AnnotationID:4870GeneID:4865
AnnotatorUID: diggins
Modification Date/Time: 2005-05-31 06:06:21
Gene Name:
Confidence Code:3
GeneProduct:putative type III secretion protein
Cell Localization:()
Synonyms:pcr2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):chaperones and heat shock proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAB54914.1| (AL117189) putative type III secretion protein [Yersinia pestis]
          Length = 123

 Score =  123 bits (309), Expect = 2e-28
 Identities = 58/122 (47%), Positives = 83/122 (68%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
other possible gene name: sycN
ReferenceID:9730
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26871
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4865

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7243 PA1700_tr translation of PA1700 123 99.18 99.99 0 632.0
189093 gb|AAG05089.1|AE004597_3 (AE004597) conserved hypothetical protein in type III secretion [Pseudomonas aeruginosa PAO1] 123 99.18 99.99 0 632.0
189094 gb|AAC45941.1| (AF010150) Pcr2 [Pseudomonas aeruginosa] 123 99.18 99.18 0 630.0
189102 emb|CAB54914.1| (AL117189) putative type III secretion protein [Yersinia pestis] 123 47.15 67.47 0 308.0
189101 emb|CAA36131.1| (X51833) unnamed protein product [Yersinia pseudotuberculosis] 123 47.15 67.47 0 308.0
GC ORFID: 47867How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1700Glimmer Score:
Start: 1167445Stop: 1167816
Length: 372
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1700 translation of PA1700Homolog Bit Score 248.0
Other Homologs: t_PA1700 (ORF: GLIMMER)
GC ORF Sequence
ATGGACTGGGTTGAGCTGGCCGTCGCGCAGTTCTGCCAGGACCTGCGGGTGAGCGTACCGGCGCCGCTGGCG
CGCGTGGTGCAACTGGATTTCGAGGACAGCGGCACCTTGCAGCTGGAACGCCATGGCGAACAGTTGTCGCTC
TGGCTGGCCTGTGACCTGGCCTGGCACCAGGCCTATCGCGGAACGCTGCGGGCGTTGCGCCTGTGCCATGCG
CGCGCGGCCGGGAGCCTGCCGCTGCGTTGCGCCTGGAGCGGCGAATCGCGCCTGCTGCTGTGCATCACCCTG
GAAGCCCGGCAGGTCGGCATCCCGACGCTGCACCAGGCCTTGCAGGCGCTGCGCTCGGCGCGCAGCGAAGTG
CTCGCCGCATGA