ViewGene
Locus Name:
GeneID:
Location:

GeneID:4864
TrivialName: PA14_46430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46430
PAO1 Ortholog Locus:PA1378
Sequence Length:363
Protein Length:120
Start: 4130471
Stop: 4130109
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04767.1|AE004567_6 (AE004567) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 120/120 (100%), Positives = 120/120 (100%)
Sequence:
GTGACGAAGGATCCTGCGACGGACAGCGGCCTGAACGTGCGCCTGGTCGCCGCGTTCGCCGGCTGGAAAGGC
ATTCCCTGGCTATGCTGGGCCCACAGCGACCTGTCCCCGCGGCTGGTCCTGCATGCGGACCGTGTCGAGTTC
CGCGTCATCCGCACGCGCTCGAAGCCGTATTCCAGCATTTCCCGGGTGGACTATCGGAAATGGCACTACACC
GAGAACATCGTGCTGGAGTTCACCGACTCGCTGACGACCTTCATCGGCAATACGATGAATCCCGCCACGGCA
CGGCAGGCGATTCGGTACTTGCAGGAAAAGGGCTGTCCGTTGTCGGAGCGGGCCAGCAACCTGGCCATGGCG
TAG
Translation:
MTKDPATDSGLNVRLVAAFAGWKGIPWLCWAHSDLSPRLVLHADRVEFRVIRTRSKPYSSISRVDYRKWHYT
ENIVLEFTDSLTTFIGNTMNPATARQAIRYLQEKGCPLSERASNLAMA*
AnnotationID:4869GeneID:4864
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1378
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15192




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26869




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4864
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7242
                           PA1378_tr
                           translation of PA1378
                           120
                           99.99
                           99.99
                           0
                           634.0
     

     
     
189092
                           gb|AAG04767.1|AE004567_6
                           (AE004567) hypothetical protein PA1378 [Pseudomonas aeruginosa PAO1]
                           120
                           99.16
                           99.99
                           0
                           631.0
     

     






      

          
GC ORFID: 47866How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1378Glimmer Score: 

          
Start: 823438Stop: 823800

          
Length: 363


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1378 translation of PA1378Homolog Bit Score 248.0

          
Other Homologs:  t_PA1378 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGAAGGATCCTGCGACGGACAGCGGCCTGAACGTGCGCCTGGTCGCCGCGTTCGCCGGCTGGAAAGGC 
ATTCCCTGGCTATGCTGGGCCCACAGCGACCTGTCCCCGCGGCTGGTCCTGCATGCGGACCGTGTCGAGTTC 
CGCGTCATCCGCACGCGCTCGAAGCCGTATTCCAGCATTTCCCGGGTGGACTATCGGAAATGGCACTACACC 
GAGAACATCGTGCTGGAGTTCACCGACTCGCTGACGACCTTCATCGGCAATACGATGAATCCCGCCACGGCA 
CGGCAGGCGATTCGGTACTTGCAGGAAAAGGGCTGTCCGTTGTCGGAGCGGGCCAGCAACCTGGCCATGGCG 
TAG