ViewGene
Locus Name:
GeneID:
Location:

GeneID:4863
TrivialName: PA14_49920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49920
PAO1 Ortholog Locus:PA1117
Sequence Length:375
Protein Length:124
Start: 4438152
Stop: 4438526
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04506.1|AE004542_2 (AE004542) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/124 (100%), Positives = 124/124 (100%)
Sequence:
ATGAAACTCGATAAAGCGGCAGCCATCGCACAGCTCAACCAGGCCTTGGGCATGTCCGTGCTGGATGCCGGC
AACACCCTGCTCGCCCGCTTCAACAAGAGCAAGAACGTCTGGTGGTTCGATATTCCGCTCAGCCAACTGAAG
GCCGGCAAGTTCCTCAACCTGCTGCTGGCGAACCCGGCCGGCGATGCAGTGGAGCACCTGAAGGTGCCCACC
GGTTTCCTTCGCCAGCAGCAGGACAGTCTGGAACTGCGCGACAAGAACGCCCGCCGGCCGACCCTCAGCCTG
GAGCTGAGCGCGGACCCCGGCAAGCGCCTGCGCGACGTCCGCCCCGGCGGCGCTGGCCTGGACTTCGCCCCG
TTCCTCCAGCCCTGA
Translation:
MKLDKAAAIAQLNQALGMSVLDAGNTLLARFNKSKNVWWFDIPLSQLKAGKFLNLLLANPAGDAVEHLKVPT
GFLRQQQDSLELRDKNARRPTLSLELSADPGKRLRDVRPGGAGLDFAPFLQP*
AnnotationID:4868GeneID:4863
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 14:02:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1117
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9726




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26867




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4863
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7241
                           PA1117_tr
                           translation of PA1117
                           124
                           99.99
                           99.99
                           0
                           632.0
     

     
     
189090
                           gb|AAG04506.1|AE004542_2
                           (AE004542) hypothetical protein PA1117 [Pseudomonas aeruginosa PAO1]
                           124
                           99.99
                           99.99
                           0
                           632.0
     

     
     
189091
                           gb|AAN70135.1|AE016653_6
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           126
                           49.20
                           65.87
                           2
                           306.0
     

     






      

          
GC ORFID: 47865How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1117Glimmer Score: 

          
Start: 515756Stop: 515382

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1117 translation of PA1117Homolog Bit Score 248.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6009 (ORF: BLASTX 120.0), t_PA1117 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTCGATAAAGCGGCAGCCATCGCACAGCTCAACCAGGCCTTGGGCATGTCCGTGCTGGATGCCGGC 
AACACCCTGCTCGCCCGCTTCAACAAGAGCAAGAACGTCTGGTGGTTCGATATTCCGCTCAGCCAACTGAAG 
GCCGGCAAGTTCCTCAACCTGCTGCTGGCGAACCCGGCCGGCGATGCAGTGGAGCACCTGAAGGTGCCCACC 
GGTTTCCTTCGCCAGCAGCAGGACAGTCTGGAACTGCGCGACAAGAACGCCCGCCGGCCGACCCTCAGCCTG 
GAGCTGAGCGCGGACCCCGGCAAGCGCCTGCGCGACGTCCGCCCCGGCGGCGCTGGCCTGGACTTCGCCCCG 
TTCCTCCAGCCCTGA