ViewGene

Locus Name:
GeneID:
Location:

GeneID:4861
TrivialName: PA14_53000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53000
PAO1 Ortholog Locus:PA0871
Sequence Length:357
Protein Length:118
Start: 4699090
Stop: 4699446
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04260.1|AE004522_2 (AE004522) pterin-4-alpha-carbinolamine dehydratase [Pseudomonas aeruginosa PAO1]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
ATGACCGCACTCACCCAAGCCCATTGCGAAGCCTGCCGCGCCGACGCCCCGCACGTCAGCGACGAAGAACTG
CCCGTGCTGCTGCGGCAGATTCCGGATTGGAACATCGAAGTCCGCGACGGCATCATGCAACTGGAGAAGGTC
TACCTGTTCAAGAACTTCAAGCACGCCCTGGCCTTTACCAATGCCGTCGGCGAGATATCCGAGGCCGAAGGC
CACCATCCGGGCCTGCTGACCGAGTGGGGCAAAGTCACCGTGACCTGGTGGAGCCACTCGATCAAGGGCCTG
CACCGCAACGACTTCATCATGGCGGCGCGCACCGACGAGGTAGCGAAAACCGCCGAGGGGCGCAAATGA
Translation:
MTALTQAHCEACRADAPHVSDEELPVLLRQIPDWNIEVRDGIMQLEKVYLFKNFKHALAFTNAVGEISEAEG
HHPGLLTEWGKVTVTWWSHSIKGLHRNDFIMAARTDEVAKTAEGRK*
AnnotationID:4866GeneID:4861
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 12:12:28
Gene Name:phhB
Confidence Code:1
GeneProduct:pterin-4-alpha-carbinolamine dehydratase
Cell Localization:()
Synonyms:PA0871
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01329, COG2154
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase.  Score: 142, 1e-35
COG2154, Pterin-4a-carbinolamine dehydratase. Score: 116, 2e-27
Structural Features:
Genomic Context:
The third gene of a 4-gene cluster encoding phenylalanine hydroxylase (PhhA),
carbinolamine dehydratase (PhhB), and aromatic aminotransferase (PhhC);
and in the upstream region, a divergently transcribed gene (phhR) encoding an activator protein.
Comment:
ReferenceID:9722
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26863
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31993
Author/Investigator(s): Zhao G, Xia T, Song J, Jensen RA.
Title: Pseudomonas aeruginosa possesses homologues of mammalian phenylalanine hydroxylase and 4 alpha-carbinolamine dehydratase/DCoH as part of a three-component gene cluster.
PubMed: 94151331
MedLine:
Source:
Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1366-70.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:4861

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7239 PA0871_tr translation of PA0871 118 99.99 99.99 0 633.0
189078 gb|AAG04260.1|AE004522_2 (AE004522) pterin-4-alpha-carbinolamine dehydratase [Pseudomonas aeruginosa PAO1] 118 99.99 99.99 0 633.0
189079 gb|AAA25937.1| (M88627) phenylalanine hydroxylase [Pseudomonas aeruginosa] 118 99.99 99.99 0 633.0
189080 gb|AAN70066.1|AE016646_3 (AE016790) pterin-4-alpha-carbinolamine dehydratase [Pseudomonas putida KT2440] 118 86.44 94.06 0 560.0
189081 gb|AAO55340.1| (AE016862) pterin-4-alpha-carbinolamine dehydratase [Pseudomonas syringae pv. tomato str. DC3000] 118 86.44 90.67 0 548.0
GC ORFID: 47863How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0871Glimmer Score:
Start: 254817Stop: 254461
Length: 357
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0871 translation of PA0871Homolog Bit Score 248.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7624 (ORF: BLASTX 223.0), t_PA0871 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCACTCACCCAAGCCCATTGCGAAGCCTGCCGCGCCGACGCCCCGCACGTCAGCGACGAAGAACTG
CCCGTGCTGCTGCGGCAGATTCCGGATTGGAACATCGAAGTCCGCGACGGCATCATGCAACTGGAGAAGGTC
TACCTGTTCAAGAACTTCAAGCACGCCCTGGCCTTTACCAATGCCGTCGGCGAGATATCCGAGGCCGAAGGC
CACCATCCGGGCCTGCTGACCGAGTGGGGCAAAGTCACCGTGACCTGGTGGAGCCACTCGATCAAGGGCCTG
CACCGCAACGACTTCATCATGGCGGCGCGCACCGACGAGGTAGCGAAAACCGCCGAGGGGCGCAAATGA