ViewGene
Locus Name:
GeneID:
Location:

GeneID:4859
TrivialName: PA14_56070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56070
PAO1 Ortholog Locus:PA4315
Sequence Length:375
Protein Length:124
Start: 5007248
Stop: 5007622
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP33788.1| (AY280952) MvaT [Pseudomonas aeruginosa PAO1]
Identities = 124/124 (100%), Positives = 124/124 (100%)
Sequence:
ATGTCCCTGATCAACGAATATCGCGCCACGGAAGAAGCCATCAAGGAACTTCAGGAGCGCCTGAAGTCCCTG
GAACAAGACGACAAACTGAAAAAAGAACTGGAATTCGAAGAGAAGCTGCGCACGCTGATGGGCACTTACCAG
AAGTCCCTGCGTGACGTGATTTCCCTGCTCGATCCGGACGCCAAGATCGGCAAGAGCACCCGCACCGCCAAG
GCGCCTGCCGGCAAGCGCGCGCGCAAGGTCAAGCAGTACAAGAACCCGCACACCGGCGAAGTCATCGAGACC
AAGGGCGGCAACCACAAGACTTTGAAAGAGTGGAAAGCCAAGTGGGGCCCCGAGGCCGTCGAGAGCTGGGCC
ACCCTGCTCGGCTAA
Translation:
MSLINEYRATEEAIKELQERLKSLEQDDKLKKELEFEEKLRTLMGTYQKSLRDVISLLDPDAKIGKSTRTAK
APAGKRARKVKQYKNPHTGEVIETKGGNHKTLKEWKAKWGPEAVESWATLLG*
AnnotationID:4864GeneID:4859
AnnotatorUID: diggins
Modification Date/Time: 2004-12-29 13:01:05
Gene Name:mvaT
Confidence Code:1
GeneProduct:transcriptional regulator MvaT, P16 subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57766.1| (AE016871) transcriptional regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 126

 Score =  202 bits (514), Expect = 3e-52
 Identities = 104/126 (82%), Positives = 111/126 (88%), Gaps = 2/126 (1%)

>gb|AAN66989.1|AE016327_4 (AE016779) transcriptional regulator MvaT, P16 subunit [Pseudomonas
           putida KT2440]
          Length = 125

 Score =  194 bits (494), Expect = 6e-50
 Identities = 98/124 (79%), Positives = 106/124 (85%), Gaps = 1/124 (0%)

>gb|AAC46083.1| (U46125) heteromeric transcriptional activator MvaT P16 subunit
           [Pseudomonas mevalonii]
          Length = 123

 Score =  179 bits (454), Expect = 3e-45
 Identities = 94/122 (77%), Positives = 101/122 (82%), Gaps = 5/122 (4%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9718




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26859




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36802




  
Author/Investigator(s):
        Vallet I, Diggle SP, Stacey RE, Camara M, Ventre I, Lory S, Lazdunski A, Williams P, Filloux A.





  
Title:
        Biofilm formation in Pseudomonas aeruginosa: fimbrial cup gene clusters are controlled by the transcriptional regulator MvaT.




  
PubMed:
        15090530


MedLine:
        




    
Source:
J Bacteriol. 2004 May;186(9):2880-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15090530









           
Homologs By Global Alignment 

           

       



     
Gene ID:4859
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7236
                           PA4315_tr
                           translation of PA4315
                           124
                           99.99
                           99.99
                           0
                           636.0
     

     
     
189060
                           gb|AAP33788.1|
                           (AY280952) MvaT [Pseudomonas aeruginosa PAO1]
                           124
                           99.99
                           99.99
                           0
                           636.0
     

     
     
189061
                           gb|AAG07703.1|AE004848_2
                           (AE004848) transcriptional regulator MvaT, P16 subunit [Pseudomonas aeruginosa PAO1]
                           124
                           99.99
                           99.99
                           0
                           636.0
     

     
     
189062
                           gb|AAO57766.1|
                           (AE016871) transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           126
                           82.53
                           88.09
                           2
                           518.0
     

     
     
189063
                           gb|AAN66989.1|AE016327_4
                           (AE016779) transcriptional regulator MvaT, P16 subunit [Pseudomonas putida KT2440]
                           125
                           78.40
                           84.80
                           1
                           495.0
     

     






      

          
GC ORFID: 47861How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4315Glimmer Score: 

          
Start: 4270924Stop: 4271298

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4315 translation of PA4315Homolog Bit Score 249.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7203 (ORF: BLASTX 132.0), psyr_15may02_Scaffold12_revised_gene1945 (ORF: BLASTX 130.0), psyr_15may02_Scaffold8_revised_gene7506 (ORF: BLASTX 119.0), t_PA2667 (ORF: BLASTX 116.0), t_PA4315 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTGATCAACGAATATCGCGCCACGGAAGAAGCCATCAAGGAACTTCAGGAGCGCCTGAAGTCCCTG 
GAACAAGACGACAAACTGAAAAAAGAACTGGAATTCGAAGAGAAGCTGCGCACGCTGATGGGCACTTACCAG 
AAGTCCCTGCGTGACGTGATTTCCCTGCTCGATCCGGACGCCAAGATCGGCAAGAGCACCCGCACCGCCAAG 
GCGCCTGCCGGCAAGCGCGCGCGCAAGGTCAAGCAGTACAAGAACCCGCACACCGGCGAAGTCATCGAGACC 
AAGGGCGGCAACCACAAGACTTTGAAAGAGTGGAAAGCCAAGTGGGGCCCCGAGGCCGTCGAGAGCTGGGCC 
ACCCTGCTCGGCTAA