ViewGene
Locus Name:
GeneID:
Location:

GeneID:4858
TrivialName: PA14_16980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16980
PAO1 Ortholog Locus:PA3663
Sequence Length:354
Protein Length:117
Start: 1454591
Stop: 1454944
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07051.1|AE004786_3 (AE004786) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 116/117 (99%), Positives = 117/117 (100%)
Sequence:
ATGAGTTGCATCGGTCGCCAGATAGACCAATTACGCCTGCAGATACCGGGCTTCGCCTGCAAGCCCGGCTGC
CACGATTGCTGCGGGCCGGTTACCGCCTCGTCGGAAGAGATGGCCCGCCTGCCGCTGAAGAGCGAGGCCGAA
CACGACGCCGCCCTGGCCGAGTGGAACTGCGTCCATCTCGGACCGAACGGCTGCGAGGCCTATGAGGAACGT
CCGCTGATCTGCCGGCTGTTCGGCACCACGCCGAACCTGCCCTGCCCGGAGGGGCGGGGGCCCGAAGTGCCG
GTGGCGGAGCAGGTGGAGCGACAGGTCCATGCGCTGATCGCCAGCACTCGCCAGGTGCTGGTGTAG
Translation:
MSCIGRQIDQLRLQIPGFACKPGCHDCCGPVTASSEEMARLPLKSEAEHDAALAEWNCVHLGPNGCEAYEER
PLICRLFGTTPNLPCPEGRGPEVPVAEQVERQVHALIASTRQVLV*
AnnotationID:4863GeneID:4858
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 09:09:10
Gene Name:
Confidence Code:3
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3663
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0727
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0727, Predicted Fe-S-cluster oxidoreductase 
CD-Length = 132 residues,  98.5% aligned
Score = 40.0 bits (92), Expect = 1e-04
Identities = 30/130 (23%), Positives = 35/130 (26%), Gaps = 23/130 (17%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9716




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26857




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31881




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4858_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4858
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7235
                           PA3663_tr
                           translation of PA3663
                           117
                           99.14
                           99.99
                           0
                           637.0
     

     
     
189057
                           gb|AAG07051.1|AE004786_3
                           (AE004786) hypothetical protein PA3663 [Pseudomonas aeruginosa PAO1]
                           117
                           99.14
                           99.99
                           0
                           637.0
     

     
     
189058
                           gb|AAN70837.1|AE016728_6
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           117
                           66.66
                           75.21
                           0
                           426.0
     

     
     
189059
                           gb|AAO53653.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           55.55
                           64.44
                           18
                           413.0
     

     






      

          
GC ORFID: 47860How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3663Glimmer Score: 

          
Start: 3499346Stop: 3498993

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3663 translation of PA3663Homolog Bit Score 249.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3156 (ORF: BLASTX 166.0)

          
GC ORF Sequence

           
ATGAGTTGCATCGGTCGCCAGATAGACCAATTACGCCTGCAGATACCGGGCTTCGCCTGCAAGCCCGGCTGC 
CACGATTGCTGCGGGCCGGTTACCGCCTCGTCGGAAGAGATGGCCCGCCTGCCGCTGAAGAGCGAGGCCGAA 
CACGACGCCGCCCTGGCCGAGTGGAACTGCGTCCATCTCGGACCGAACGGCTGCGAGGCCTATGAGGAACGT 
CCGCTGATCTGCCGGCTGTTCGGCACCACGCCGAACCTGCCCTGCCCGGAGGGGCGGGGGCCCGAAGTGCCG 
GTGGCGGAGCAGGTGGAGCGACAGGTCCATGCGCTGATCGCCAGCACTCGCCAGGTGCTGGTGTAG