ViewGene
Locus Name:
GeneID:
Location:

GeneID:4857
TrivialName: PA14_23720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23720
PAO1 Ortholog Locus:PA3123
Sequence Length:378
Protein Length:125
Start: 2062046
Stop: 2062423
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06511.1|AE004736_8 (AE004736) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/125 (99%), Positives = 125/125 (100%)
Sequence:
ATGAGCGATGACATCCAGCGTTACCCCAGCAGCCTGCCGTTTCCCTTTTCCCGCGCGGTGCGGGCCGGCGGC
TTCCTGTTTCTTTCCGGACAGGTGCCGATGAGTCCGACCGGCGAGGTGGTACGTGGCGATATCCAGACCCAG
ACCGAAGCGGTGATGGCACGCATCGGCGAGACCCTGGAGAGCTGTGGCGCGCGTTTCGACCAACTGGTGAAG
GTCACCGTCTGGCTGTCGGACATGGCCCACTTCGCCGGTTTCAACGAGGTCTACCAGCGTCATGTGCAGGGG
GCCTTGCCGGTACGCTCGACGGTGACCGCCGGGCTGGCGCTGGGGGTCGACGTGGAGGTCGAGGTGCAGGCG
TGGGTCGGCGAGGGCTGA
Translation:
MSDDIQRYPSSLPFPFSRAVRAGGFLFLSGQVPMSPTGEVVRGDIQTQTEAVMARIGETLESCGARFDQLVK
VTVWLSDMAHFAGFNEVYQRHVQGALPVRSTVTAGLALGVDVEVEVQAWVGEG*
AnnotationID:4862GeneID:4857
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 07:07:46
Gene Name:
Confidence Code:3
GeneProduct:putative translation initiation inhibitor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative endoribonuclease
Functional Category Confidence Code:5
COGs:pfam01042,COG0251
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67860.1|AE016417_8 (AE016782) endoribonuclease, putative [Pseudomonas putida KT2440]
          Length = 125

 Score =  195 bits (496), Expect = 3e-50

>dbj|BAB51105.1| (AP003004) translation initiation inhibitor [Mesorhizobium loti]
          Length = 132

 Score = 96.3 bits (238), Expect = 3e-20







 
Structural Features:
pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP.
CD-Length = 120 residues,  92.5% aligned
Score = 99.2 bits (247), Expect = 1e-22
Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

COG0251, TdcF, Putative translation initiation inhibitor, yjgF family 
CD-Length = 130 residues,  86.9% aligned
Score =  117 bits (295), Expect = 3e-28
Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
[Translation, ribosomal structure and biogenesis]








   
Genomic Context:






   
Comment:


















    ReferenceID:9714




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26855




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38095




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4857_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4857
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7234
                           PA3123_tr
                           translation of PA3123
                           125
                           99.20
                           99.99
                           0
                           637.0
     

     
     
189053
                           gb|AAG06511.1|AE004736_8
                           (AE004736) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           125
                           99.20
                           99.99
                           0
                           637.0
     

     
     
189054
                           gb|AAN67860.1|AE016417_8
                           (AE016782) endoribonuclease, putative [Pseudomonas putida KT2440]
                           125
                           77.60
                           86.40
                           0
                           496.0
     

     
     
189055
                           emb|CAE33305.1|
                           (BX640445) Conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           141
                           53.19
                           63.12
                           17
                           377.0
     

     
     
189056
                           emb|CAE37982.1|
                           (BX640431) Conserved hypothetical protein [Bordetella parapertussis]
                           141
                           53.19
                           63.12
                           17
                           377.0
     

     






      

          
GC ORFID: 47859How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3123Glimmer Score: 

          
Start: 2891885Stop: 2891508

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3123 translation of PA3123Homolog Bit Score 249.0

          
Other Homologs:  t_PA3123 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATGACATCCAGCGTTACCCCAGCAGCCTGCCGTTTCCCTTTTCCCGCGCGGTGCGGGCCGGCGGC 
TTCCTGTTTCTTTCCGGACAGGTGCCGATGAGTCCGACCGGCGAGGTGGTACGTGGCGATATCCAGACCCAG 
ACCGAAGCGGTGATGGCACGCATCGGCGAGACCCTGGAGAGCTGTGGCGCGCGTTTCGACCAACTGGTGAAG 
GTCACCGTCTGGCTGTCGGACATGGCCCACTTCGCCGGTTTCAACGAGGTCTACCAGCGTCATGTGCAGGGG 
GCCTTGCCGGTACGCTCGACGGTGACCGCCGGGCTGGCGCTGGGGGTCGACGTGGAGGTCGAGGTGCAGGCG 
TGGGTCGGCGAGGGCTGA