ViewGene
Locus Name:
GeneID:
Location:

GeneID:4856
TrivialName: PA14_24760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24760
PAO1 Ortholog Locus:PA3041
Sequence Length:381
Protein Length:126
Start: 2165212
Stop: 2164832
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06429.1|AE004729_3 (AE004729) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/126 (100%), Positives = 126/126 (100%)
Sequence:
ATGAGCGAAGGAAAGGACCCGGCGGACGGCCGCCCCTCCCTGCGGCGCTTCGGCGCCGCCTTCCTCGGCCTG
TTGCACGGTCACGTCGAGCTGTTCGGCATCGAGCTGCAGGAACAGAAGGCCAACACCCTGCGCCTGCTGCTG
TTCGCCGGGCTGGCCCTGGTATTCGCCCTGCTCCTGCTGGTCGGCCTGTCGCTGCTGGTGCTGATCGTGTTC
TGGGACACCAACCGGCTCGCAGCGGCGCTCGGGTTGTGCCTGTTCTACGTGATCGGCTCGCTGTTCTGCGGC
TGGCGCCTGTACCAGTCGATCAACGACGAAAGCTCGCCGTTCAGCGCCACCCTGGAAGAACTGGCCAACGAC
CGCGAGCGACTGCTGCCATGA
Translation:
MSEGKDPADGRPSLRRFGAAFLGLLHGHVELFGIELQEQKANTLRLLLFAGLALVFALLLLVGLSLLVLIVF
WDTNRLAAALGLCLFYVIGSLFCGWRLYQSINDESSPFSATLEELANDRERLLP*
AnnotationID:4861GeneID:4856
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:16
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yqjE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5393
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5393, Predicted membrane protein
CD-Length = 131 residues,  94.7% aligned
Score =  141 bits (357), Expect = 2e-35
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9712




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26853




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36009




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4856_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4856
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7233
                           PA3041_tr
                           translation of PA3041
                           126
                           99.99
                           99.99
                           0
                           637.0
     

     
     
189050
                           gb|AAG06429.1|AE004729_3
                           (AE004729) hypothetical protein PA3041 [Pseudomonas aeruginosa PAO1]
                           126
                           99.99
                           99.99
                           0
                           637.0
     

     
     
189051
                           gb|AAO55845.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           130
                           68.46
                           78.46
                           4
                           428.0
     

     
     
189052
                           gb|AAN67718.1|AE016403_3
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           127
                           63.77
                           76.37
                           4
                           391.0
     

     






      

          
GC ORFID: 47858How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3041Glimmer Score: 

          
Start: 2788716Stop: 2789096

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3041 translation of PA3041Homolog Bit Score 249.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene347 (ORF: BLASTX 169.0), t_PA3041 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAGGAAAGGACCCGGCGGACGGCCGCCCCTCCCTGCGGCGCTTCGGCGCCGCCTTCCTCGGCCTG 
TTGCACGGTCACGTCGAGCTGTTCGGCATCGAGCTGCAGGAACAGAAGGCCAACACCCTGCGCCTGCTGCTG 
TTCGCCGGGCTGGCCCTGGTATTCGCCCTGCTCCTGCTGGTCGGCCTGTCGCTGCTGGTGCTGATCGTGTTC 
TGGGACACCAACCGGCTCGCAGCGGCGCTCGGGTTGTGCCTGTTCTACGTGATCGGCTCGCTGTTCTGCGGC 
TGGCGCCTGTACCAGTCGATCAACGACGAAAGCTCGCCGTTCAGCGCCACCCTGGAAGAACTGGCCAACGAC 
CGCGAGCGACTGCTGCCATGA