ViewGene
Locus Name:
GeneID:
Location:

GeneID:4855
TrivialName: PA14_27720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27720
PAO1 Ortholog Locus:PA2816
Sequence Length:381
Protein Length:126
Start: 2403576
Stop: 2403196
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06204.1|AE004708_10 (AE004708) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/126 (100%), Positives = 126/126 (100%)
Sequence:
ATGCTCAAGCTATTTGCCACCGGCCTGGCAGCCTCGTTTCTCCTCCTGCCCCCGGCGCAGGCCGCACCGCCT
GCGCCCTATGGCGTGCAGCCGCACCAGCAGGCGGTGCAGCGCGCTGGCGAACAGCGCCAACGCCAGCTCCAG
GAACAGCGCCAGCGCTTCGACGAACAACGCCTGCAACTGCAGCAGGATCAACTGCAACGCCAGCAGCAGAAC
CTGCAGCGGCAACGGCAGCAGCGACAGATGCAGGACAACCTGATCCGCCAGCAGCAACTGGACCAGCAGCGC
TGGCGCCTGGAGCAGGACCAGCGGCGCCTCGACAGCGAACGCCGGCAACTGGAAAACCGCCGGCGCCAGAGC
CAGTCCCCGGCGATCCGCTGA
Translation:
MLKLFATGLAASFLLLPPAQAAPPAPYGVQPHQQAVQRAGEQRQRQLQEQRQRFDEQRLQLQQDQLQRQQQN
LQRQRQQRQMQDNLIRQQQLDQQRWRLEQDQRRLDSERRQLENRRRQSQSPAIR*
AnnotationID:4860GeneID:4855
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 10:10:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2816
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9710




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26851




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36226




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4855_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4855
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7232
                           PA2816_tr
                           translation of PA2816
                           126
                           99.99
                           99.99
                           0
                           636.0
     

     
     
189049
                           gb|AAG06204.1|AE004708_10
                           (AE004708) hypothetical protein PA2816 [Pseudomonas aeruginosa PAO1]
                           126
                           99.99
                           99.99
                           0
                           636.0
     

     






      

          
GC ORFID: 47857How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2816Glimmer Score: 

          
Start: 2550351Stop: 2550731

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2816 translation of PA2816Homolog Bit Score 249.0

          
Other Homologs:  t_PA2816 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAAGCTATTTGCCACCGGCCTGGCAGCCTCGTTTCTCCTCCTGCCCCCGGCGCAGGCCGCACCGCCT 
GCGCCCTATGGCGTGCAGCCGCACCAGCAGGCGGTGCAGCGCGCTGGCGAACAGCGCCAACGCCAGCTCCAG 
GAACAGCGCCAGCGCTTCGACGAACAACGCCTGCAACTGCAGCAGGATCAACTGCAACGCCAGCAGCAGAAC 
CTGCAGCGGCAACGGCAGCAGCGACAGATGCAGGACAACCTGATCCGCCAGCAGCAACTGGACCAGCAGCGC 
TGGCGCCTGGAGCAGGACCAGCGGCGCCTCGACAGCGAACGCCGGCAACTGGAAAACCGCCGGCGCCAGAGC 
CAGTCCCCGGCGATCCGCTGA