ViewGene

Locus Name:
GeneID:
Location:

GeneID:4854
TrivialName: PA14_42870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42870
PAO1 Ortholog Locus:PA1672
Sequence Length:381
Protein Length:126
Start: 3810092
Stop: 3810472
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05061.1|AE004594_13 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/126 (98%), Positives = 125/126 (99%)
Sequence:
ATGAACCTGATCGCGCACGTGGAAATACCGGTGTCCGACCTGGAGAGGGCGATGCGTTTCTACGCCTCGGTG
TTCGGAGTGGCGTTCGGCGAGGTAGCCACCCTGCACGGAAGCAGAATGGCGCATTTCCCCTTCGAGGAAGGC
CGTGACGGTGCCAGCGGCGCACTCGCCGAGGGCGACGTCTACGTGCCTACGCTACATGGGGCGATCATCTAC
CTGAATGTCGCGGACCTGGATGTCGTCCTTGCCCGGGCCCTCGGCGAAGGCAGCGAAATCCTCTTCCCGAAG
ACGCCGCTTGGCGACGGCGTGTTCATCGCCGAGATCAGGGACAGCGAAGGCAATCGTATCGCCCTGCAGAGC
GCTTGCGGAGAGCGGCCGTAG
Translation:
MNLIAHVEIPVSDLERAMRFYASVFGVAFGEVATLHGSRMAHFPFEEGRDGASGALAEGDVYVPTLHGAIIY
LNVADLDVVLARALGEGSEILFPKTPLGDGVFIAEIRDSEGNRIALQSACGERP*
AnnotationID:4859GeneID:4854
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 18:06:11
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme
Cell Localization:()
Synonyms:PA1672
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3324
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3324, COG3324, Predicted enzyme related to lactoylglutathione lyase
CD-Length = 127 residues,  95.3% aligned
Score =  123 bits (309), Expect = 8e-30
Identities = 48/123 (39%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Genomic Context:
Comment:
ReferenceID:9708
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26849
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37176
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4854_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4854

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7231 PA1672_tr translation of PA1672 126 98.41 99.20 0 635.0
189046 gb|AAG05061.1|AE004594_13 (AE004594) hypothetical protein PA1672 [Pseudomonas aeruginosa PAO1] 126 98.41 99.20 0 635.0
189047 dbj|BAC89506.1| (AP006573) glr1565 [Gloeobacter violaceus PCC 7421] 131 45.03 66.41 13 296.0
189048 gb|AAK23809.1| (AE005858) conserved hypothetical protein [Caulobacter crescentus CB15] 171 38.01 49.12 49 303.0
GC ORFID: 47856How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1672Glimmer Score:
Start: 1143817Stop: 1143437
Length: 381
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1672 translation of PA1672Homolog Bit Score 249.0
Other Homologs: t_PA1672 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCTGATCGCGCACGTGGAAATACCGGTGTCCGACCTGGAGAGGGCGATGCGTTTCTACGCCTCGGTG
TTCGGAGTGGCGTTCGGCGAGGTAGCCACCCTGCACGGAAGCAGAATGGCGCATTTCCCCTTCGAGGAAGGC
CGTGACGGTGCCAGCGGCGCACTCGCCGAGGGCGACGTCTACGTGCCTACGCTACATGGGGCGATCATCTAC
CTGAATGTCGCGGACCTGGATGTCGTCCTTGCCCGGGCCCTCGGCGAAGGCAGCGAAATCCTCTTCCCGAAG
ACGCCGCTTGGCGACGGCGTGTTCATCGCCGAGATCAGGGACAGCGAAGGCAATCGTATCGCCCTGCAGAGC
GCTTGCGGAGAGCGGCCGTAG