ViewGene
Locus Name:
GeneID:
Location:

GeneID:4853
TrivialName: PA14_54340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54340
PAO1 Ortholog Locus:PA0769
Sequence Length:378
Protein Length:125
Start: 4819602
Stop: 4819225
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04158.1|AE004512_1 (AE004512) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/125 (100%), Positives = 125/125 (100%)
Sequence:
ATGAGGTTCGCGCGTTCGCAGAAGGGGATGTCCCTGCTGGGGTGGCTGGTGGTGCTGGGCGTGGTGGCGTTC
TTCGCCAGCGCCGCATTCAAGATCATCCCGCACTACATGGATTACTACTCGCTGGAGAAGGTGATCACTTCC
GTGGAGACCGACAAGGCGGCCGAGGTGCGTTCCGTGCCGGAGTTCTACAGCTACGTCGGCAAGGGGATGCAG
ATCAACGGCATCCGCAACCTGGACCTGGAGAAGGCCCTGGAGGTGCAACTGGAAGACAACCAATTCCGGGCG
CACCTGAAATATGAAAAACGCGAGCCACTGATCAGCAACATCGACCTGGTGGTCCACTTCGACAAAGAATTC
CGTGTACGCATGCCGTGA
Translation:
MRFARSQKGMSLLGWLVVLGVVAFFASAAFKIIPHYMDYYSLEKVITSVETDKAAEVRSVPEFYSYVGKGMQ
INGIRNLDLEKALEVQLEDNQFRAHLKYEKREPLISNIDLVVHFDKEFRVRMP*
AnnotationID:4858GeneID:4853
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 16:04:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0769
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9706




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26847




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4853
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7230
                           PA0769_tr
                           translation of PA0769
                           125
                           99.99
                           99.99
                           0
                           635.0
     

     
     
189044
                           gb|AAG04158.1|AE004512_1
                           (AE004512) hypothetical protein PA0769 [Pseudomonas aeruginosa PAO1]
                           125
                           99.99
                           99.99
                           0
                           635.0
     

     
     
189045
                           gb|AAO57674.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           52.80
                           76.80
                           0
                           379.0
     

     






      

          
GC ORFID: 47855How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0769Glimmer Score: 

          
Start: 134305Stop: 134682

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0769 translation of PA0769Homolog Bit Score 249.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6218 (ORF: BLASTX 154.0), t_PA0769 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGTTCGCGCGTTCGCAGAAGGGGATGTCCCTGCTGGGGTGGCTGGTGGTGCTGGGCGTGGTGGCGTTC 
TTCGCCAGCGCCGCATTCAAGATCATCCCGCACTACATGGATTACTACTCGCTGGAGAAGGTGATCACTTCC 
GTGGAGACCGACAAGGCGGCCGAGGTGCGTTCCGTGCCGGAGTTCTACAGCTACGTCGGCAAGGGGATGCAG 
ATCAACGGCATCCGCAACCTGGACCTGGAGAAGGCCCTGGAGGTGCAACTGGAAGACAACCAATTCCGGGCG 
CACCTGAAATATGAAAAACGCGAGCCACTGATCAGCAACATCGACCTGGTGGTCCACTTCGACAAAGAATTC 
CGTGTACGCATGCCGTGA