ViewGene
Locus Name:
GeneID:
Location:

GeneID:4852
TrivialName: PA14_06730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06730
PAO1 Ortholog Locus:PA0517
Sequence Length:360
Protein Length:119
Start: 588009
Stop: 587650
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03906.1|AE004488_10 (AE004488) probable c-type cytochrome precursor [Pseudomonas aeruginosa PAO1]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
ATGAACGCCCCTCCGGACTTCCGGCGCGCCGCCAGCCACGCCTTGTGGCTGGCCCTCGCGCTGACGTTCGCC
TGTCCTCTTCCGGGCCTGGCCGACGAGCATCCCGATGCCCGTCGCCAGGCCCAGTTGCGTCACCTGCTGTTG
CAGGACTGCGGCTCCTGCCACGGCCTGCGCCTGACCGGCGGCCTCGGCCCGGCGCTGACCCCCGAGGCCCTG
CGCGGCAAGCCGCGCGAATCGCTGGTCGCCACCGTGCTCATGGGCCGTCCGCAAACCCCGATGCCCCCCTGG
GCCGGCCTGCTCAGCGAAGACGACGCCGGCTGGCTGGTGGACCGCCTGATCGAAGGAGAGATCGCCCCATGA
Translation:
MNAPPDFRRAASHALWLALALTFACPLPGLADEHPDARRQAQLRHLLLQDCGSCHGLRLTGGLGPALTPEAL
RGKPRESLVATVLMGRPQTPMPPWAGLLSEDDAGWLVDRLIEGEIAP*
AnnotationID:4857GeneID:4852
AnnotatorUID: diggins
Modification Date/Time: 2005-05-08 15:03:17
Gene Name:nirC
Confidence Code:2
GeneProduct:putative c-type cytochrome precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAA93120.1| (U05002) cytochrome c (c55X) [Paracoccus denitrificans]
          Length = 103

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 47/82 (57%), Positives = 57/82 (69%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9704




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26845




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33825




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4852_cdd.html


    		




 
URL:

















    ReferenceID:35308




  
Author/Investigator(s):
        Kawasaki S, Arai H, Igarashi Y, Kodama T.





  
Title:
        Sequencing and characterization of the downstream region of the genes encoding nitrite reductase and cytochrome c-551 (nirSM) from Pseudomonas aeruginosa: identification of the gene necessary for biosynthesis of heme d1.





  
PubMed:
        8566817


MedLine:
        




    
Source:
Gene. 1995 Dec 29;167(1-2):87-91.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8566817

















    ReferenceID:35309




  
Author/Investigator(s):
        Hasegawa N, Arai H, Igarashi Y.





  
Title:
        Two c-type cytochromes, NirM and NirC, encoded in the nir g




  
PubMed:
        11700043


MedLine:
        




    
Source:
Biochem Biophys Res Commun. 2001 Nov 16;288(5):1223-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700043









           
Homologs By Global Alignment 

           

       



     
Gene ID:4852
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7229
                           PA0517_tr
                           translation of PA0517
                           119
                           99.99
                           99.99
                           0
                           638.0
     

     
     
189041
                           gb|AAG03906.1|AE004488_10
                           (AE004488) probable c-type cytochrome precursor [Pseudomonas aeruginosa PAO1]
                           119
                           99.99
                           99.99
                           0
                           638.0
     

     
     
189042
                           dbj|BAA09065.1|
                           (D50473) c-type cytochrome [Pseudomonas aeruginosa]
                           119
                           99.99
                           99.99
                           0
                           638.0
     

     
     
189043
                           emb|CAA40154.1|
                           (X56813) unnamed protein product [Pseudomonas stutzeri]
                           122
                           58.19
                           62.29
                           12
                           316.0
     

     






      

          
GC ORFID: 47854How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0517Glimmer Score: 

          
Start: 6389351Stop: 6388992

          
Length: 360


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0517 translation of PA0517Homolog Bit Score 250.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACGCCCCTCCGGACTTCCGGCGCGCCGCCAGCCACGCCTTGTGGCTGGCCCTCGCGCTGACGTTCGCC 
TGTCCTCTTCCGGGCCTGGCCGACGAGCATCCCGATGCCCGTCGCCAGGCCCAGTTGCGTCACCTGCTGTTG 
CAGGACTGCGGCTCCTGCCACGGCCTGCGCCTGACCGGCGGCCTCGGCCCGGCGCTGACCCCCGAGGCCCTG 
CGCGGCAAGCCGCGCGAATCGCTGGTCGCCACCGTGCTCATGGGCCGTCCGCAAACCCCGATGCCCCCCTGG 
GCCGGCCTGCTCAGCGAAGACGACGCCGGCTGGCTGGTGGACCGCCTGATCGAAGGAGAGATCGCCCCATGA