ViewGene
Locus Name:
GeneID:
Location:

GeneID:4851
TrivialName: PA14_56980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56980
PAO1 Ortholog Locus:PA4383
Sequence Length:384
Protein Length:127
Start: 5078062
Stop: 5077679
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07771.1|AE004854_7 (AE004854) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/127 (99%), Positives = 126/127 (99%)
Sequence:
ATGTGGAAATCCATTCTCGCCATCGCCCTCGGCGCCGCCCTGGGGGCGTTGCTGCGCTGGTTCCTCGGGCTC
AAGCTGAACAGCCTGCTGTCCAGCATTCCCCCCGGCACGCTGCTGGCCAACCTGGTCGGCGGCTATGTCATC
GGTGCGGCGATTGCCTATTTCGCCCAGGCGCCGGGCATCGCTCCGGAATGGCGGCTACTGATCATCACCGGG
TTCTGCGGCGGCCTGACCACTTTCTCCACCTTTTCCGCCGAGGTCGTCAGCCTGCTTCAGGAGGGCCGCCTG
GGCTGGGCCGCCGGGGCCATCGCGACGCACGTCAGCGGCTCGTTGCTGATGACTCTGCTGGGGTTGTTCTCG
ATGAACTGGATGCTGGGCAAATAG
Translation:
MWKSILAIALGAALGALLRWFLGLKLNSLLSSIPPGTLLANLVGGYVIGAAIAYFAQAPGIAPEWRLLIITG
FCGGLTTFSTFSAEVVSLLQEGRLGWAAGAIATHVSGSLLMTLLGLFSMNWMLGK*
AnnotationID:4856GeneID:4851
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 10:10:46
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane protein
Cell Localization:()
Synonyms:crcB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0239,pfam02537
Secondary Functional Category(ies):cell division
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85615.1| (BX321862) CRCB protein [Nitrosomonas europaea ATCC 19718]
          Length = 127

 Score =  183 bits (464), Expect = 2e-46
 Identities = 84/123 (68%), Positives = 101/123 (82%)

>emb|CAC92839.1| (AJ414153) putative membrane protein [Yersinia pestis CO92]
          Length = 127

 Score =  142 bits (358), Expect = 3e-34
 Identities = 65/122 (53%), Positives = 90/122 (73%)

>gb|AAN79188.1|AE016757_92 (AE016757) Protein crcB [Escherichia coli CFT073]
          Length = 127

 Score =  126 bits (317), Expect = 2e-29
 Identities = 60/119 (50%), Positives = 81/119 (68%)






 
Structural Features:
COG0239, CrcB, Integral membrane protein possibly involved 
in chromosome condensation 
[Cell division and chromosome partitioning]
CD-Length = 126 residues, 100.0% aligned
Score = 92.9 bits (231), Expect = 2e-20
Identities = 61/126 (48%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

pfam02537, CRCB, CrcB-like protein. 
CD-Length = 117 residues,  98.3% aligned
Score = 87.1 bits (216), Expect = 1e-18
Identities = 60/115 (52%), Positives = 74/115 (64%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9702




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17140




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4851_cdd.html


    		




 
URL:

















    ReferenceID:26843




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38155




  
Author/Investigator(s):
        Sand O, Gingras M, Beck N, Hall C, Trun N.





  
Title:
        Phenotypic characterization of overexpression or deletion of the Escherichia coli crcA, cspE and crcB genes.




  
PubMed:
        12904550


MedLine:
        




    
Source:
Microbiology. 2003 Aug;149(Pt 8):2107-17.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12904550&query_hl=23









           
Homologs By Global Alignment 

           

       



     
Gene ID:4851
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7228
                           PA4383_tr
                           translation of PA4383
                           127
                           99.21
                           99.21
                           0
                           639.0
     

     
     
189015
                           gb|AAG07771.1|AE004854_7
                           (AE004854) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           127
                           99.21
                           99.21
                           0
                           639.0
     

     
     
189016
                           gb|AAQ59614.2|
                           (AE016916) membrane protein [Chromobacterium violaceum ATCC 12472]
                           127
                           71.65
                           81.88
                           1
                           466.0
     

     
     
189018
                           gb|AAK49548.1|AF359557_13
                           (AF359557) unknown [Pseudomonas syringae pv. maculicola]
                           128
                           66.40
                           81.25
                           2
                           443.0
     

     
     
189017
                           emb|CAD85615.1|
                           (BX321862) CRCB protein [Nitrosomonas europaea ATCC 19718]
                           127
                           66.14
                           79.52
                           0
                           462.0
     

     






      

          
GC ORFID: 47853How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4383Glimmer Score: 

          
Start: 4341738Stop: 4341355

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4383 translation of PA4383Homolog Bit Score 250.0

          
Other Homologs:  t_PA4383 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGAAATCCATTCTCGCCATCGCCCTCGGCGCCGCCCTGGGGGCGTTGCTGCGCTGGTTCCTCGGGCTC 
AAGCTGAACAGCCTGCTGTCCAGCATTCCCCCCGGCACGCTGCTGGCCAACCTGGTCGGCGGCTATGTCATC 
GGTGCGGCGATTGCCTATTTCGCCCAGGCGCCGGGCATCGCTCCGGAATGGCGGCTACTGATCATCACCGGG 
TTCTGCGGCGGCCTGACCACTTTCTCCACCTTTTCCGCCGAGGTCGTCAGCCTGCTTCAGGAGGGCCGCCTG 
GGCTGGGCCGCCGGGGCCATCGCGACGCACGTCAGCGGCTCGTTGCTGATGACTCTGCTGGGGTTGTTCTCG 
ATGAACTGGATGCTGGGCAAATAG