ViewGene
Locus Name:
GeneID:
Location:

GeneID:4850
TrivialName: PA14_08990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08990
PAO1 Ortholog Locus:PA4249
Sequence Length:393
Protein Length:130
Start: 765947
Stop: 766339
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07637.1|AE004841_15 (AE004841) 30S ribosomal protein S8 [Pseudomonas aeruginosa PAO1]
Identities = 130/130 (100%), Positives = 130/130 (100%)
Sequence:
ATGAGTATGCAGGACCCGTTAGCAGACATGCTAACTCGCATCCGTAATGCCCAGATGGCTGAAAAGACCGTC
GTAAGCATGCCGTCCTCGAAACTGAAAGCGGCGGTAGCCAAAGTCCTGAAGGACGAAGGCTATATTGCGGAT
TTCCAGATCAGCTCGGAAGTAAAACCCCAGCTGTCCATCGAACTGAAGTACTTCGAAGGCAAGCCTGTCATC
GAAGAGGTCAAGCGCATCAGCCGTCCTGGCCTGCGTCAGTACAAATCCGTTGAGCAACTGCCGAAAGTTCGT
GGCGGCCTCGGTGTGTCGATCGTCTCCACCAACAAAGGTGTGATGACCGATCGTGCTGCCCGTGCTGCTGGT
GTTGGCGGCGAAGTGCTCTGCACTGTGTTCTAA
Translation:
MSMQDPLADMLTRIRNAQMAEKTVVSMPSSKLKAAVAKVLKDEGYIADFQISSEVKPQLSIELKYFEGKPVI
EEVKRISRPGLRQYKSVEQLPKVRGGLGVSIVSTNKGVMTDRAARAAGVGGEVLCTVF*
AnnotationID:4855GeneID:4850
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:06
Gene Name:rpsH
Confidence Code:2
GeneProduct:30S ribosomal protein S8
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00410
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54182.1| (AE016858) ribosomal protein S8 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 130

 Score =  226 bits (576), Expect = 2e-59
 Identities = 117/130 (90%), Positives = 122/130 (93%)

>gb|AAN66098.1|AE016238_16 (AE016775) ribosomal protein S8 [Pseudomonas putida KT2440]
          Length = 130

 Score =  224 bits (571), Expect = 7e-59
 Identities = 114/130 (87%), Positives = 121/130 (93%)

>gb|AAN53330.1|AE015473_17 (AE015473) ribosomal protein S8 [Shewanella oneidensis MR-1]
          Length = 130

 Score =  186 bits (471), Expect = 3e-47
 Identities = 88/129 (68%), Positives = 109/129 (84%)






 
Structural Features:
pfam00410, Ribosomal_S8, Ribosomal protein S8.
CD-Length = 126 residues, 100.0% aligned
Score =  154 bits (391), Expect = 3e-39
Identities = 68/127 (53%), Positives = 91/127 (71%), Gaps = 2/127 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9700




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26841




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36630




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4850_cdd.html


    		




 
URL:

















    ReferenceID:36724




  
Author/Investigator(s):
        Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M.





  
Title:
        The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.




  
PubMed:
        6222285


MedLine:
        




    
Source:
Nucleic Acids Res. 1983 May 11;11(9):2599-616.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6222285









           
Homologs By Global Alignment 

           

       



     
Gene ID:4850
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7227
                           PA4249_tr
                           translation of PA4249
                           130
                           99.99
                           99.99
                           0
                           638.0
     

     
     
188868
                           gb|AAG07637.1|AE004841_15
                           (AE004841) 30S ribosomal protein S8 [Pseudomonas aeruginosa PAO1]
                           130
                           99.99
                           99.99
                           0
                           638.0
     

     
     
188869
                           gb|AAO54182.1|
                           (AE016858) ribosomal protein S8 [Pseudomonas syringae pv. tomato str. DC3000]
                           130
                           90.00
                           93.84
                           0
                           576.0
     

     
     
188870
                           gb|AAN66098.1|AE016238_16
                           (AE016775) ribosomal protein S8 [Pseudomonas putida KT2440]
                           130
                           87.69
                           93.07
                           0
                           571.0
     

     
     
188871
                           gb|AAN53330.1|AE015473_17
                           (AE015473) ribosomal protein S8 [Shewanella oneidensis MR-1]
                           130
                           67.69
                           83.84
                           0
                           469.0
     

     






      

          
GC ORFID: 47852How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4249Glimmer Score: 

          
Start: 4187992Stop: 4187600

          
Length: 393


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4249 translation of PA4249Homolog Bit Score 250.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5199 (ORF: BLASTX 226.0), t_PA4249 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTATGCAGGACCCGTTAGCAGACATGCTAACTCGCATCCGTAATGCCCAGATGGCTGAAAAGACCGTC 
GTAAGCATGCCGTCCTCGAAACTGAAAGCGGCGGTAGCCAAAGTCCTGAAGGACGAAGGCTATATTGCGGAT 
TTCCAGATCAGCTCGGAAGTAAAACCCCAGCTGTCCATCGAACTGAAGTACTTCGAAGGCAAGCCTGTCATC 
GAAGAGGTCAAGCGCATCAGCCGTCCTGGCCTGCGTCAGTACAAATCCGTTGAGCAACTGCCGAAAGTTCGT 
GGCGGCCTCGGTGTGTCGATCGTCTCCACCAACAAAGGTGTGATGACCGATCGTGCTGCCCGTGCTGCTGGT 
GTTGGCGGCGAAGTGCTCTGCACTGTGTTCTAA