ViewGene
Locus Name:
GeneID:
Location:

GeneID:4849
TrivialName: PA14_24050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24050
PAO1 Ortholog Locus:PA3099
Sequence Length:390
Protein Length:129
Start: 2088566
Stop: 2088955
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06487.1|AE004734_5 (AE004734) general secretion pathway protein I [Pseudomonas aeruginosa PAO1]
Identities = 128/129 (99%), Positives = 129/129 (100%)
Sequence:
ATGAGGCGCGCTCGTGGTTTCACCCTGCTGGAAGTGCTGGTGGCCCTGGCGATCTTCGCCATGGTCGCGGCC
AGCGTGCTCAGTGCCAGCGCGCGCAGCCTGCAGAACGCCTCGCGACTGGAAGACAAGACCCTGGCGATGTGG
ATCGCCGACAACCGTCTCAACGAATTGCAACTGGAACAGACGCCGCCCTCCAGCGGCCGCAACCAGGGCGAG
CTGGAGTTCGCCGGGCGCCGCTGGGAGTGGCGCACCCAGGTCGACAGCACCGCCGAGCAGGATATGCGGCGG
GTGATCGTCTGGGTCGCGGCGAAGCCCCTTGGCCGCGAGCGTGGCAGCATCGAGGAACGCGCCGCGGCGCGC
CTCGTCGGTTTCCTCGGGAGCCAGCCATGA
Translation:
MRRARGFTLLEVLVALAIFAMVAASVLSASARSLQNASRLEDKTLAMWIADNRLNELQLEQTPPSSGRNQGE
LEFAGRRWEWRTQVDSTAEQDMRRVIVWVAAKPLGRERGSIEERAAARLVGFLGSQP*
AnnotationID:4854GeneID:4849
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:29
Gene Name:xcpV
Confidence Code:1
GeneProduct:general secretion pathway protein I
Cell Localization:()
Synonyms:pddC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:PilD-dependent protein
Functional Category Confidence Code:5
COGs:pfam02501
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC83360.1| (AF092918) outer membrane secretion protein V [Pseudomonas
           alcaligenes]
          Length = 129

 Score =  158 bits (400), Expect = 4e-39
 Identities = 81/129 (62%), Positives = 98/129 (75%)








 
Structural Features:
pfam02501, GSPII_IJ, Bacterial type II secretion system protein I/J.
CD-Length = 114 residues, 100.0% aligned
Score =  116 bits (292), Expect = 8e-28
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 7/121 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9698




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26839




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32425




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4849_cdd.html


    		




 
URL:

















    ReferenceID:33457




  
Author/Investigator(s):
        Lu HM, Motley ST, Lory S.





  
Title:
        Interactions of the components of the general secretion pathway: role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion.




  
PubMed:
        9282737


MedLine:
        




    
Source:
Mol Microbiol. 1997 Jul;25(2):247-59.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9282737

















    ReferenceID:33458




  
Author/Investigator(s):
        Nunn DN, Lory S.





  
Title:
        Cleavage, methylation, and localization of the Pseudomonas aeruginosa export proteins XcpT, -U, -V, and -W.




  
PubMed:
        8331069


MedLine:
        




    
Source:
J Bacteriol. 1993 Jul;175(14):4375-82.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8331069









           
Homologs By Global Alignment 

           

       



     
Gene ID:4849
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7226
                           PA3099_tr
                           translation of PA3099
                           129
                           99.22
                           99.99
                           0
                           638.0
     

     
     
188864
                           gb|AAG06487.1|AE004734_5
                           (AE004734) general secretion pathway protein I [Pseudomonas aeruginosa PAO1]
                           129
                           99.22
                           99.99
                           0
                           638.0
     

     
     
188865
                           emb|CAA44537.1|
                           (X62666) secretion protein XcpV [Pseudomonas aeruginosa]
                           129
                           99.22
                           99.99
                           0
                           638.0
     

     
     
188866
                           gb|AAA25948.1|
                           (M80792) PilD-dependent protein [Pseudomonas aeruginosa]
                           129
                           99.22
                           99.99
                           0
                           638.0
     

     
     
188867
                           gb|AAC83360.1|
                           (AF092918) outer membrane secretion protein V [Pseudomonas alcaligenes]
                           129
                           62.79
                           75.96
                           0
                           400.0
     

     






      

          
GC ORFID: 47851How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3099Glimmer Score: 

          
Start: 2865365Stop: 2864976

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3099 translation of PA3099Homolog Bit Score 250.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGGCGCGCTCGTGGTTTCACCCTGCTGGAAGTGCTGGTGGCCCTGGCGATCTTCGCCATGGTCGCGGCC 
AGCGTGCTCAGTGCCAGCGCGCGCAGCCTGCAGAACGCCTCGCGACTGGAAGACAAGACCCTGGCGATGTGG 
ATCGCCGACAACCGTCTCAACGAATTGCAACTGGAACAGACGCCGCCCTCCAGCGGCCGCAACCAGGGCGAG 
CTGGAGTTCGCCGGGCGCCGCTGGGAGTGGCGCACCCAGGTCGACAGCACCGCCGAGCAGGATATGCGGCGG 
GTGATCGTCTGGGTCGCGGCGAAGCCCCTTGGCCGCGAGCGTGGCAGCATCGAGGAACGCGCCGCGGCGCGC 
CTCGTCGGTTTCCTCGGGAGCCAGCCATGA