ViewGene

Locus Name:
GeneID:
Location:

GeneID:4848
TrivialName: PA14_28380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28380
PAO1 Ortholog Locus:PA2762
Sequence Length:345
Protein Length:114
Start: 2451709
Stop: 2452053
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06150.1|AE004704_4 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/114 (100%), Positives = 114/114 (100%)
Sequence:
ATGTCAGATTTCATCACCGTACTGCGCGATACCTGTCCCGTACCCGTGCTGGACGCCACCAAGTGGAAGCGG
ATCGACGGCGATCCGCATACCGTCAACCTCAACGCATACGCCTCGGCGGACGGCAGCAAGCTGATGGGCACC
TGGATCTGCACGCCGGGCAAGTGGGAGGTGAACTACGAACGCTGGGAGTTCTGCCACTTCCTCGACGGCTAC
TGCATCATCACCCCGGAAGGCGAGCAACCGGTGCACCTGAGGGCGGGCGACGTGTTCGTCATCGAGCCGGGC
CTGCGTGGTACCTGGGAGGTAGTGGAGACGGTGCGCAAGTACTTCGTCTTCGCCTGA
Translation:
MSDFITVLRDTCPVPVLDATKWKRIDGDPHTVNLNAYASADGSKLMGTWICTPGKWEVNYERWEFCHFLDGY
CIITPEGEQPVHLRAGDVFVIEPGLRGTWEVVETVRKYFVFA*
AnnotationID:4853GeneID:4848
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2762
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9696
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26837
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36273
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4848_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4848

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7225 PA2762_tr translation of PA2762 114 99.99 99.99 0 639.0
188862 gb|AAG06150.1|AE004704_4 (AE004704) hypothetical protein PA2762 [Pseudomonas aeruginosa PAO1] 114 99.99 99.99 0 639.0
188863 gb|AAN70238.1|AE016663_6 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 114 87.71 96.49 0 581.0
GC ORFID: 47850How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2762Glimmer Score:
Start: 2502217Stop: 2501873
Length: 345
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2762 translation of PA2762Homolog Bit Score 250.0
Other Homologs: t_PA2762 (ORF: GLIMMER)
GC ORF Sequence
ATGTCAGATTTCATCACCGTACTGCGCGATACCTGTCCCGTACCCGTGCTGGACGCCACCAAGTGGAAGCGG
ATCGACGGCGATCCGCATACCGTCAACCTCAACGCATACGCCTCGGCGGACGGCAGCAAGCTGATGGGCACC
TGGATCTGCACGCCGGGCAAGTGGGAGGTGAACTACGAACGCTGGGAGTTCTGCCACTTCCTCGACGGCTAC
TGCATCATCACCCCGGAAGGCGAGCAACCGGTGCACCTGAGGGCGGGCGACGTGTTCGTCATCGAGCCGGGC
CTGCGTGGTACCTGGGAGGTAGTGGAGACGGTGCGCAAGTACTTCGTCTTCGCCTGA